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- 2D to 3D
- 2dload
- 2dload.py
- 3D In Cori
- 3D Pipeline Explanation
- 64 bit version of DOCK
- ?
- A. Substructure searching in Relibase
- AB3
- AB3 Developer Notes
- ABBB
- ABBBR
- AMBER Score
- AMIS:Gene
- AMSOL
- API
- AWS:Cleanup
- AWS:Merge and download results
- AWS:Set up account
- AWS:Submit docking job
- AWS:Track costs
- AWS:Upload docking files to aws
- AWS:Upload files for docking
- AWS Auto Scaling
- AWS DOCK Environment Setup
- AWS DOCK Environment Setup Advanced Usage
- AWS General Notes
- About
- About ZINC subsets
- About our cluster
- Access
- Acquire and deploy hardware
- Activity data
- Add TLDR module
- Adding Static Waters to the Protein Structure
- Adding memory to a virtual machine
- Adverse
- Aggregator Advisor
- Aggregator advisor
- Aggregators
- All About DB2 Files
- All services
- Allosteric sites
- Allowing NFS through iptables/firewalld
- Amsol 7 patch
- Analysing the results
- Analyze ligand geometries using the Cambridge Structural Database (CSD)
- Analyzing DOCK 3.7 Results
- Analyzing DOCK Results
- Anchor and Grow
- Andrii's notes on SynthI
- Another get poses.py
- Another getposes.py
- Api15
- Applications of DOCK
- Apply for SciNet Account
- Are critical points/spheres supported in my version of DOCK?
- Arkeia
- Arthor Databases
- Arthor Documentation for Future Developer
- Assay Kits
- Assaying Compound Activity
- Asthma
- Atom Definition Rules
- AutoDock
- AutoQSAR/DeepChem for billions of molecules
- Automated Database Preparation
- Automating purchasability
- Automount/autofs
- Available Docking Programs
- B. Comparing the interactions of different ligands with the same target
- BCIRC
- BKS Networks
- BKS Oracle 10.2.0.1.0 LOG
- BKS lab Structure preparation
- Backup Scheme
- Backup policy
- Backups
- Basic Installation/Configuration of Server
- Basic Tutorial
- Be blasti
- Bemis-Murcko Scaffold Analysis
- Ben DOCKAWS Notes
- Benchmark
- Benchmarking
- Benchmarking Sets
- Benchmarks
- Best:Desktop Usage
- Best:Disk Usage
- Best:More
- Best:SGE Usage
- Best database to screen
- Best practices
- Beta-setup
- Beta Secretase
- Bioinformatics
- Bioisostere Tool
- Bioisosteres
- Black list
- Blacklist
- Blah
- Blaster18
- Blaster Issues
- Blastermaster
- Blastermaster2.0
- Blastermaster (pydock3 script)
- Blastermaster CLI
- Blastermaster files
- Blogs we read
- Bonded Network Connections
- Bootstrap AUC
- Brian Shoichet
- Broken molecules 2017
- Btz
- Bugs
- Build ChEMBL for SEA
- Build new dock64 docker image
- Build research lab
- Building Covalent Libraries
- Building Solid Foundations for a Structure Based Design Campaign – Erice 2008
- Building Solid Foundations for a Structure Based Design Campaign – Workshop handout Erice 2008
- Building The 3D Pipeline ZINC22
- Building blocks
- Bump Filter
- C. Validating an unusual interaction using substructure searching in Relibase
- CB DOCK 3.8 tutorial
- CB Iridium
- CC:Arthor
- CC:Library preparation
- CC:Smallworld
- CCP4
- CDK2
- CHARMM
- CHEMryia
- CLI Enumeration
- CSD
- Cactvs
- Calculate DOCK6 RMSD
- Calculate ECFP4 using RDKit
- Calculate NPR values & Generate Heatmap
- Calculate RMSD between two sets of molecules (eg, Crystal pose vs. docked pose)
- Calculate volume of the binding site and molecules
- Can DOCK6 write an info file as DOCK4 did?
- Cartblanche22 Build Instructions
- Cassidy clustering
- Catalyst
- Caveat Emptor
- CentOS 7 Base.repo
- Centos
- Cert-workaround
- Certificate
- ChEMBL
- ChEMBL API
- ChEMBL errata
- Cheat sheet
- Checkout dockenv
- Chem.defn
- ChemAxon
- Chem match.tbl
- Chemaxon
- Chembl
- Chembl2pdb
- Chembl filter out
- Chembl processing protocol
- Chemdraw figure preparation
- Chemgrid
- Chemical Diversity
- Chemical Informatics
- Chemical Informatics Software
- Chemical Information
- Chemical Matching
- Chemical Space
- Chemical informatics
- Chemical reactions
- Chemical space
- Cheminformatics
- Chemistry Commons
- Chemistry commons Notes
- Chemoinformatics
- Chemoinformatics Waiver Wire
- Chemspace API
- Chimera
- Chimera Tutorial (AMPC)
- Chimera Tutorial (Delta opioid receptor)
- Choosing a subset
- Citations
- Classic Dock References
- Clean axis
- Clinical Trials
- Clinical Trials Loading
- Clinical testing
- Clinical trials
- Clinical trials and aggregation
- Clinical trials curation
- Cluster
- Cluster 0
- Cluster 0 account
- Cluster 1
- Cluster 2
- Cluster 2 account
- Cluster 3
- Cluster 4
- Cluster 5
- Cluster 6
- Cluster Narrative
- Cluster Security Monitoring Tools
- Cluster Theory
- Cluster Usage
- Cluster exceptions
- Coding tips DOCK 3.7
- Coloring and Subcluster Matching
- Combichem
- Combinatorial analogs
- Command Line Arguments
- Command line arguments in DOCK6
- Commercial
- Compbio middleware
- Complaints
- Comptuer assignments
- Computer Aided Drug Discovery
- Computer aided drug design
- Computer aided drug discovery
- Conda environment issue
- Conditionally free
- Configure new disk
- Configuring IPMI
- Configuring an OpenSSH Server
- Contact
- Contact Score
- Continuous Score
- Continuous curation
- Continuous service policy
- Contract Research Organizations
- Contribute
- Contributed Code
- Control of bkslab.org
- Conversion of .rxn files to reaction SMARTS
- Convert CD to an ISO Image
- Converting SMILES to Kekule Format
- Copy protect in google docs
- Copying files
- Covalent Library Preparation 2024
- Covalent library preparation 2023
- Covid19
- Create
- Create an aws ec2 image
- Create decoy tables
- Create new user
- Create venv
- Creating Maps on SmallWorld
- Creating clinical name mappings
- Critical Points
- Cron
- Csd
- Curating AMIS
- Curating reactions
- Curation of ZINC-22 3D
- Curator
- Curl zinc
- Current NFS Mounts
- Current Problems
- Currently in progress
- Customize shell
- DB2 File Format
- DISI
- DNS Notes
- DOCK
- DOCK3.7 INDOCK
- DOCK3.7 INDOCK Minimization Parameter
- DOCK3.8:Pydock3
- DOCK38:Job configuration
- DOCK6 FAQ
- DOCK:FAQ
- DOCK:History
- DOCK:Problems
- DOCK 3
- DOCK 3.5
- DOCK 3.5.54
- DOCK 3.5 Score
- DOCK 3.6
- DOCK 3.6 User Manual
- DOCK 3.7
- DOCK 3.7 2014/09/25 FXa Tutorial
- DOCK 3.7 2015/04/15 abl1 Tutorial
- DOCK 3.7 2016/09/16 Tutorial for Enrichment Calculations (Trent & Jiankun)
- DOCK 3.7 2016/09/16 abl1 Tutorial
- DOCK 3.7 2016/09/16 abl1 Tutorial(building)
- DOCK 3.7 2018/06/05 abl1 Tutorial
- DOCK 3.7 Development
- DOCK 3.7 tart
- DOCK 3.7 tutorial (Anat)
- DOCK 3.7 tutorial based on Webinar 2017/06/28
- DOCK 3.7 with GIST tutorials
- DOCK 3.8
- DOCK 3.8:How to build a release
- DOCK 3.8:How to install pydock3
- DOCK 4
- DOCK 5
- DOCK 6
- DOCK 6.11
- DOCK 6.6
- DOCK 6.7
- DOCK 6.9
- DOCK Accessories
- DOCK Blaster
- DOCK Blaster:1157
- DOCK Blaster:2389
- DOCK Blaster:4100
- DOCK Blaster:50826
- DOCK Blaster:Alpha Test
- DOCK Blaster:Broken molecules
- DOCK Blaster:CPU Time
- DOCK Blaster:Calibration docking
- DOCK Blaster:Crash
- DOCK Blaster:Custom Database
- DOCK Blaster:Dock PDB target
- DOCK Blaster:Download files
- DOCK Blaster:FAQ
- DOCK Blaster:Failure with PDB code
- DOCK Blaster:History
- DOCK Blaster:Initial Evaluation
- DOCK Blaster:Input Troubleshooting
- DOCK Blaster:Interpreting Results
- DOCK Blaster:Job Management
- DOCK Blaster:Large Database Docking
- DOCK Blaster:Other Input Options
- DOCK Blaster:Other Options
- DOCK Blaster:Philosophy
- DOCK Blaster:Preliminaries
- DOCK Blaster:Prepare Input
- DOCK Blaster:Prepare Ligand
- DOCK Blaster:Prepare Receptor
- DOCK Blaster:Problems
- DOCK Blaster:Progress Bar
- DOCK Blaster:Protocols
- DOCK Blaster:Reliability
- DOCK Blaster:Results
- DOCK Blaster:Results Browser
- DOCK Blaster:Sample Data
- DOCK Blaster:Sample data
- DOCK Blaster:Suggestions
- DOCK Blaster:Technical Details
- DOCK Blaster:Timings
- DOCK Blaster:Tutorial 1
- DOCK Blaster:Tutorial 2