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  1. 2dload.py
  2. 3D In Cori
  3. 3D Pipeline Explanation
  4. AB3 Developer Notes
  5. AMIS:Gene
  6. AWS:Upload docking files to aws
  7. Adverse
  8. Aggregators
  9. All About DB2 Files
  10. Allowing NFS through iptables/firewalld
  11. Amsol 7 patch
  12. Analyze ligand geometries using the Cambridge Structural Database (CSD)
  13. Andrii's notes on SynthI
  14. Another get poses.py
  15. Another getposes.py
  16. Api15
  17. Assay Kits
  18. AutoQSAR/DeepChem for billions of molecules
  19. BKS Networks
  20. Bemis-Murcko Scaffold Analysis
  21. Ben DOCKAWS Notes
  22. Beta-setup
  23. Bioisostere Tool
  24. Bioisosteres
  25. Blah
  26. Blastermaster2.0
  27. Bonded Network Connections
  28. Bootstrap AUC
  29. Broken molecules 2017
  30. Btz
  31. Build new dock64 docker image
  32. CB DOCK 3.8 tutorial
  33. CB Iridium
  34. Calculate ECFP4 using RDKit
  35. Calculate NPR values & Generate Heatmap
  36. Calculate RMSD between two sets of molecules (eg, Crystal pose vs. docked pose)
  37. Calculate volume of the binding site and molecules
  38. Cartblanche22 Build Instructions
  39. Cheat sheet
  40. Chemspace API
  41. Chimera Tutorial (AMPC)
  42. Clinical Trials Loading
  43. Coding tips DOCK 3.7
  44. Coloring and Subcluster Matching
  45. Conda environment issue
  46. Contract Research Organizations
  47. Conversion of .rxn files to reaction SMARTS
  48. Converting SMILES to Kekule Format
  49. Covid19
  50. Create an aws ec2 image
  51. Current NFS Mounts
  52. DOCK3.7 INDOCK Minimization Parameter
  53. DOCK 3.7 2014/09/25 FXa Tutorial
  54. DOCK 3.7 2015/04/15 abl1 Tutorial
  55. DOCK 3.7 2016/09/16 Tutorial for Enrichment Calculations (Trent & Jiankun)
  56. DOCK 3.7 2016/09/16 abl1 Tutorial
  57. DOCK 3.7 2016/09/16 abl1 Tutorial(building)
  58. DOCK 3.7 2018/06/05 abl1 Tutorial
  59. DOCK 3.7 tutorial (Anat)
  60. DOCK 3.7 tutorial based on Webinar 2017/06/28
  61. DOCK 3.7 with GIST tutorials
  62. DOCK 6.9
  63. DOCK Accessories
  64. DOCK Blaster:1157
  65. DOCK Blaster:2389
  66. DOCK Blaster:4100
  67. DOCK Blaster:50826
  68. DOCK memory and CPU benchmark
  69. DOCKovalent linker design tutoral
  70. DOCKovalent linker design tutorial
  71. DOCKovalent lysine inhibitor design tutorial
  72. DOWNLOAD PKV GAMES APK ANDROID IOS
  73. Database Filter
  74. Dell PowerConnect 6248 Switch
  75. Dimorphite-DL
  76. Dockmaster
  77. Dockopt (pydock3 script)
  78. Downloading purchasing information
  79. ECFP4 Best First Clustering
  80. Enabling Bitlocker Encryption on Windows 10
  81. Excipients
  82. Extended Search of Analogs via Bioisosteric Replacements
  83. FEP+ for GPCR
  84. Failures of ECFP4 Part 1
  85. Filtering ligands for novelty
  86. Firewalld
  87. Flexible Docking: tarting and thin spheres
  88. Format And Mount local2
  89. GPCR modeling tips and tricks
  90. GPU DOCK
  91. Generating decoys (DUDE-Z)
  92. Generating decoys (Reed's way)
  93. Generating extrema set
  94. Genes with no purchasable ligands
  95. Global Matching Sphere Optimization
  96. Google patents
  97. Google sheets hit picking
  98. Grant number
  99. Heather's notes
  100. History of DOCK 6
  101. How I Migrated Wiki from Centos 6 to Centos 7
  102. How To Connect To Printers
  103. How To Load New ZINC Databases
  104. How to Backup a Hypervisor
  105. How to Create Cluster 7 (Ubuntu 20.04)
  106. How to Create a Hypervisor
  107. How to Fix Monitor Outputting "OUT OF RANGE SIGNAL, CANNOT DISPLAY VIDEO MODE"
  108. How to Format an External Hard Drive on Linux that is compatible with other OS
  109. How to Migrate a Virtual Machine
  110. How to do indexing, partition, and migration in Postgres 10
  111. How to do parallel search of smi files on the cluster
  112. How to do parameter scanning
  113. How to install and configure JupyterHub
  114. How to install and configure R Shiny
  115. How to install python virtualenv
  116. How to process results from a large-scale docking
  117. How to use Blastermaster 2.0 on UCSF computers
  118. How to use Globus
  119. INDOCK
  120. If you accidentally delete a disk image while VM is still running
  121. Install Miniconda
  122. Installing libreoffice
  123. Installing msms
  124. Interaction Filtering
  125. Interactive ligands visualizer
  126. Internal Energy Calculation
  127. JUDI ONLINE INDONESIA
  128. Jji jeremy
  129. JupyterNotebook
  130. KVM: Live Migration of Virtual Machine
  131. LUNA
  132. LVM: Logical Volume Manager
  133. Lab Virtual Machines
  134. Lab Website
  135. Large-scale SMILES Requesting and Fingerprints Converting
  136. Large-scale SMILES requesting
  137. Large-scale TC Calculations
  138. Ldap admin
  139. Ldap workaround
  140. Legacy IDs in ZINC22
  141. Ligand File Input
  142. Ligand Flexibility
  143. LoadingZINC21
  144. Loading And Creating ZINC Partitions Automatically
  145. LogP vs logD
  146. Mailing address for the Shoichet lab
  147. March2019 protocol
  148. Matching Sphere Scan
  149. Membrane Modeling
  150. Minimize protein-covalent ligand complex with AMBER
  151. Minimize protein-ligand complex with AMBER
  152. NCI Platted
  153. Nailgun
  154. Natural products
  155. Network Access Control
  156. New 3D Building On Wynton
  157. New hartwig libraries
  158. New zinc15 questions
  159. No viable poses
  160. Official file locations
  161. Olivier's way of computing novelty
  162. One time funky gene name cleanup
  163. Oracle scraps
  164. Orienting the Ligand
  165. Other Useful Stuff
  166. PDB surface points for figures
  167. Partial indexes
  168. Particle Shape Calculator for CCDC/Mercury
  169. Performance testing
  170. Performing a Query on 22B Molecules
  171. PostgreSQL configuration
  172. Prepare a receptor with a cofactor for docking
  173. Problematic Machines
  174. Protein Target Preparation
  175. Protein Target Preparation Updated
  176. PubChem in ChEMBL
  177. Python DOCK3.8
  178. Qconf-mrqs
  179. Qnifft compile, run
  180. Quartzy and BearBuy
  181. Queues
  182. Rack Power (PDUs)
  183. Removing Spheres (The Chase Method)
  184. Renew Schrodinger Licenses
  185. Rescoring with DOCK 3.7
  186. Rpi
  187. Rsyncing zinc15
  188. Runall.sh
  189. SELinux notes
  190. Sample Additional Ring Puckers
  191. Sea16 installment
  192. Search
  193. Search zinc22.py
  194. Server Room Machines
  195. Set up chimerax for use with tldr
  196. Shoichet Lab Photos
  197. Slurm Installation Guide
  198. Smallworld and Arthor Databases
  199. Software Raid
  200. Ssh tunnel (Trent's way)
  201. Standup tuesday
  202. Strain Filtering
  203. Substructure searching
  204. Suggestion box
  205. Switch-4-1
  206. Switch-5-1
  207. Switch-6-1 and Switch-7-1
  208. Synthesia
  209. TC analog searching in ZINC
  210. TLDR:bioisostere
  211. TLDR:bootstrap1
  212. TLDR:bootstrap2
  213. TLDR:decoygen
  214. TLDR:extrema
  215. TLDR:newbuild3d
  216. TLDR:strain
  217. TLDR:swbatch
  218. Tau
  219. The Lab Windows VM and VirtualBox
  220. There must be 5 ways to kick zinc
  221. Tomcat Installation on CentOS 6
  222. Tomcat on n-1-136
  223. Tools18:about
  224. Tools18:credit
  225. Tools18:help
  226. Tools18:usage
  227. Torsion against CSD visualize with Maestro
  228. Tunnel how to
  229. Tutorial on running DOCK3.7 with GIST
  230. Tutorial on running DOCK3.7 with blury-GIST
  231. Tutorial on running Molecular Dynamics for GIST grid generation
  232. Tutorial on running Molecular Dynamics for GIST grid generation with scripts
  233. Tutorial on running Molecular Dynamics for GIST grid generation with scripts 2
  234. Ucsfdock
  235. Useful chimera commands
  236. Using thin spheres in DOCK3.7
  237. ViewDock
  238. Virsh commands
  239. Visualize docking grids
  240. What does DOCK do?
  241. What is loaded in ZINC?
  242. Whole Library TC to Knowns Calculations
  243. Why Loading ZINC Is So Slow
  244. ZINC15:Estimates
  245. ZINC15:Model building
  246. ZINC20
  247. ZINC20:What's New
  248. ZINC22 Partitions
  249. ZINC:1529567
  250. ZINC ideas
  251. Zinc15 decoys
  252. Zinc15 property exports

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