Category:Cluster: Difference between revisions

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We currently have three computer clusters, but aim to reduce this to two or even one.
Set up your own cluster? see: [[So you want to set up a lab]]  If you are a group member, please use [[Cluster 2]]. Generally, these are kept separate, with some specific [[cluster exceptions|exceptions]].


* [[Cluster 0]] also known as the legacy cluster is in San Francisco at UCSF.  (was UCSF Cluster). It will shrink in 2014 as equipment is transferred to [[Cluster 2]]. In our perfect world, it will be completely gone in 2015.
{| class="wikitable"
* [[Cluster 1]] is in the pharmacy building at U of T.  (was UofT Cluster). Ask the [[sysadmin]]s about this cluster for important information.
|-
* [[Cluster 2]] is in Byers Hall 101 and Genentech Hall 108 at UCSF aka "the new cluster".
! Cluster ID !! Description !! How to get started || sge-CPU-cores || Our disk space || Notes
|-
| [[Cluster 0]] ||  Legacy UCSF cluster || Closed || 590 || 20 TB ||  Legacy use only.  Will continue to shrink.
|-
| [[Cluster 1]] || Toronto Cluster || Closed||  448 ||40 TB || Defunct
|-
| [[Cluster 2]] ||  New UCSF cluster || Teague || 448 || 120 TB || Default cluster
|-
| [[Cluster 3]] || [https://salilab.org/qb3cluster UCSF Shared Cluster] || Teague -> Josh || 6301 || 120 TB || Shared UID space! cross mounted disks!
|-
| [[Cluster 5]] || [https://aws.amazon.com/ Amazon Cloud] ||  Teague  || unlimited || unlimited ||  Commercial. Ask us. Watch out for bandwidth costs.
|-
| [[Cluster 6]] || [https://cloud.google.com/ Google cloud] ||  Teague || unlimited || unlimited ||  Commercial. Ask us. Watch out for bandwidth costs.
|}


Access clusters via sgehead if on campus, [[Portal system | portals]] if off campus.
Access our clusters from [[Lab Security Policy | secure machines]] only.  If unsure, ask the [[sysadmin]]s.
 
We also have access to the QB3 shared cluster:
 
* [https://salilab.org/qb3cluster QB3 Shared Cluster] aka [[Cluster 3]].
 
We can also use commercial cloud clusters
* Amazon cloud EC2, which we affectionately refer to as [[Cluster 5]]
* Google cloud, which we call [[Cluster 6]].
 
Need advice about which cluster to use? Ask the [[sysadmin]].


[[Category:Internal]]
[[Category:Internal]]
[[Category:Cluster]]
[[Category:Topic]]

Latest revision as of 06:26, 3 June 2015

Set up your own cluster? see: So you want to set up a lab If you are a group member, please use Cluster 2. Generally, these are kept separate, with some specific exceptions.

Cluster ID Description How to get started sge-CPU-cores Our disk space Notes
Cluster 0 Legacy UCSF cluster Closed 590 20 TB Legacy use only. Will continue to shrink.
Cluster 1 Toronto Cluster Closed 448 40 TB Defunct
Cluster 2 New UCSF cluster Teague 448 120 TB Default cluster
Cluster 3 UCSF Shared Cluster Teague -> Josh 6301 120 TB Shared UID space! cross mounted disks!
Cluster 5 Amazon Cloud Teague unlimited unlimited Commercial. Ask us. Watch out for bandwidth costs.
Cluster 6 Google cloud Teague unlimited unlimited Commercial. Ask us. Watch out for bandwidth costs.

Access our clusters from secure machines only. If unsure, ask the sysadmins.

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