Category:Cluster: Difference between revisions

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== Current Usage Narrative ==  
== Current Usage Narrative ==  


As of July 17, 2026:  
As of September 9, 2026:
* Cluster 2 is your default choice for local compute. Most things work here.  
* Cluster 7: default for new users. Many things work here, and all of Cluster 2 is accessible read-only from Cluster 7.  
* Cluster 3 aka Wynton is your default for "at scale" calculations. Most of ZINC and most software is here. Cluster 3 will be going away in 2027. We'
* Cluster 8: aka CoreHPC/FAC. Katie now has docking and 3D building working there. We have recently expanded to 50 TB.  
're not sure exactly when.
Legacy:
* Cluster 7 should be your default choice for local compute, except it still lacks some features and software. This is the cluster that will grow most between now and 2030 assuming we survive our leaders.  
* Cluster 2: old default, most people are still using C2. New users should generally not be added.  
* Cluster 8 will be your default choice for "at scale" calculations by 2027. For now, you can get access, and there is spare capacity.  
* Cluster 3: aka Wynton, you have about 5 month left. We strongly urge you to a. consolidate your footprint as small as you can on Wynton.  Backup your data to C7 or C2.  
* Cluster 0 still exists, but is "legacy" and is being wound up.  
* Cluster 0: still in use, supports DUDE and not a lot else.  
* Cluster 6 aka Keiser still exists, but is "legacy" and is being wound up.
* Cluster 6: aka Keiser. Rapidly shrinking. If you are still using Keiser cluster, please wind down, transfer files off, and stop.
* Cluster 1 has not existed since 2014. ixnay onyay ethay uestionsqay.


== Set up your own cluster ==
== Set up your own cluster ==
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== New group members ==  
== New group members ==  
please use [[Cluster 7]].
* please use [[Cluster 7]] and [[Cluster 8]].
Most group members as of Feb 2026 are using [[Cluster 2]].
A few are using [[Cluster 7]], just ask us. Cluster 8 (coreHPC) is available.
[[cluster exceptions|exceptions]].
[[cluster exceptions|exceptions]].
** the cpu/gpu and disk spaces are guesses and no effort has been made to make them accurate. If you know the correct numbers, please update and indicate this **


{| class="wikitable"
{| class="wikitable"
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| [[Cluster 2]] ||  New UCSF cluster || Closed || 800/52 || 6.5 PB || No new growth. Merge into Cluster 7
| [[Cluster 2]] ||  New UCSF cluster || Closed || 800/52 || 6.5 PB || No new growth. Merge into Cluster 7
|-
|-
| [[Cluster 3]]  || [https://salilab.org/qb3cluster UCSF Shared Cluster] aka Wynton ||  Closed || 18,000/250 || 6 PB ||  Wynton is end of life. Merging with cluster 8.
| [[Cluster 3]]  || [https://salilab.org/qb3cluster UCSF Shared Cluster] aka Wynton ||  Closed || 18,000/250 || 6 PB ||  End of life. Use cluster 7 & 8.
|-
|-
| [[Cluster 5]]  || [https://aws.amazon.com/ Amazon Cloud] ||  ask John  || unlimited || unlimited ||  Commercial. Ask us. Watch out for bandwidth costs.
| [[Cluster 5]]  || [https://aws.amazon.com/ Amazon Cloud] ||  ask John  || unlimited || unlimited ||  Commercial. Ask us. Watch out for runaway costs.
|-
|-
| [[Cluster 6]]  || Mike Keiser cluster ||  Closed || 100/50 || 1 PB ||  End of life. being merged into cluster 7
| [[Cluster 6]]  || Mike Keiser cluster ||  Closed || 100/50 || 1 PB ||  End of life. Being merged into cluster 7.
|-
|-
| [[Cluster 7]]  || New Cluster 7 ||  JJ/Khanh || 100/8 || 1 PB ||  Future main private cluster for our group
| [[Cluster 7]]  || New Cluster 7 ||  JJ/Khanh || 100/8 || 1 PB ||  Default for new users
|-
|-
| [[Cluster 8]]  || FAC/coreHPC ||  UCSF IT || 16,000/350 || 1 PB ||  UCSF replacement for Wynton
| [[Cluster 8]]  || FAC/coreHPC ||  UCSF IT || 16,000/350 || 50 TB on FAC ||  CoreHPC/FAC. Default for new users.
|-
|-
| [[Cluster 9]]  || Offsite experimental cluster ||  John || 64/4 || 1 PB ||  off-site cluster
| [[Cluster 9]]  || Offsite experimental cluster ||  John || 64/4 || 1 PB ||  off-site cluster

Latest revision as of 18:17, 10 September 2026

Current Usage Narrative

As of September 9, 2026:

  • Cluster 7: default for new users. Many things work here, and all of Cluster 2 is accessible read-only from Cluster 7.
  • Cluster 8: aka CoreHPC/FAC. Katie now has docking and 3D building working there. We have recently expanded to 50 TB.

Legacy:

  • Cluster 2: old default, most people are still using C2. New users should generally not be added.
  • Cluster 3: aka Wynton, you have about 5 month left. We strongly urge you to a. consolidate your footprint as small as you can on Wynton. Backup your data to C7 or C2.
  • Cluster 0: still in use, supports DUDE and not a lot else.
  • Cluster 6: aka Keiser. Rapidly shrinking. If you are still using Keiser cluster, please wind down, transfer files off, and stop.

Set up your own cluster

see: So you want to set up a lab

New group members

exceptions.

Cluster ID Description How to get started cpu/gpu Disk space Notes
Cluster 0 Legacy UCSF cluster Closed 300/0 20 TB Legacy support. Retire asap.
Cluster 1 Toronto Cluster Closed 448/0 40 TB Defunct
Cluster 2 New UCSF cluster Closed 800/52 6.5 PB No new growth. Merge into Cluster 7
Cluster 3 UCSF Shared Cluster aka Wynton Closed 18,000/250 6 PB End of life. Use cluster 7 & 8.
Cluster 5 Amazon Cloud ask John unlimited unlimited Commercial. Ask us. Watch out for runaway costs.
Cluster 6 Mike Keiser cluster Closed 100/50 1 PB End of life. Being merged into cluster 7.
Cluster 7 New Cluster 7 JJ/Khanh 100/8 1 PB Default for new users
Cluster 8 FAC/coreHPC UCSF IT 16,000/350 50 TB on FAC CoreHPC/FAC. Default for new users.
Cluster 9 Offsite experimental cluster John 64/4 1 PB off-site cluster

Access our clusters from secure machines only. If unsure, ask the sysadmins.

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