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Welcome to DISI (Disi Is Still Incomplete), the wiki of the [[Shoichet Lab]] and [[Irwin Lab]] at [UCSF | Welcome to DISI (Disi Is Still Incomplete, "dizzy"), the wiki of the [[Shoichet Lab]] and [[Irwin Lab]] at [[UCSF]]. It is also a resource for software tools and databases related to ligand discovery and pharmacology at "docking.org". We hope you find what you are looking for, but if not, it is editable. If you don't like it, login and [[contribute | edit it and help us improve]] (please). This wiki aims to serve several [[:Category:Roles | constituencies]], and is a work in progress. [https://forms.gle/LZV1FCmLWxUWznVi9 Tell us how we are doing] | ||
== Software and Databases == | == Software and Databases == | ||
Revision as of 00:27, 26 April 2024
Welcome to DISI (Disi Is Still Incomplete, "dizzy"), the wiki of the Shoichet Lab and Irwin Lab at UCSF. It is also a resource for software tools and databases related to ligand discovery and pharmacology at "docking.org". We hope you find what you are looking for, but if not, it is editable. If you don't like it, login and edit it and help us improve (please). This wiki aims to serve several constituencies, and is a work in progress. Tell us how we are doing
Software and Databases
| Main article | Description | Notes/Links |
|---|---|---|
| DOCK | Our molecular docking software | Latest are DOCK 3.7 and DOCK 6.7 dock.docking.org |
| SEA | Similarity Ensemble Approach | Drug repurposing, target identification, phenotypic screening. sea.bkslab.org |
| ZINC | Commercially available compounds | zinc15.docking.org |
| DOCK Blaster | A public access service for docking screens | blaster.docking.org |
| DUDE and DUD | Benchmarks for docking | dude.docking.org/generate |
| TLDR | TLDR is a Ligand Discovery Resource | advisor.docking.org |
| Other_tools | Other tools and databases | link goes here |
Other Starting Points
Services
We offer many public services, including software and databases that are free to use and download. For software distributions, for-profit organizations are generally required to obtain a commercial license, e.g. see http://dock.compbio.ucsf.edu/Online_Licensing/index.htm.
Outages
Our servers are up all the time, with rare exceptions. If we must perform maintenance, we will communicate this in advance via our blog http://docking.org, which is also available as an RSS feed. We also try to use our Facebook page http://facebook.com/zincdb and our twitter feed @chem4biology when we remember. If there is an unscheduled outage (crash), we will do our best to communicate this via our blog as soon as possible. If our servers appear down or broken and we have not communicated this, we would be grateful to be told via support at docking.org or +(415) 937-1461
Support
If you have a problem or a question, we always like to hear about it. Please see feedback for how to communicate with us.
Policies, Privacy and all that
We aim to keep confidential information such as passwords secure, but we can offer no guarantees. You must use these services at your own risk. See our privacy policy. An SSL version of ZINC is available.