ZINC scripts

ZINC scripts.

download a list of molecules in mol2 format by zincid

#!/usr/bin/perl -w
# jji. July 2012 -  read list of ZINC ids from stdin, output mol2 files, reference pH, as mol2
#
while (<STDIN>) { 
    my $a = $_; chop $a;
    print `wget -q -O - "http://zinc.docking.org/substance/reps/ref/$a.mol2"`;
}