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• CC:Smallworld
  Chemistry commons similarity search with smallworld Each [[chemistry commons]] library that is created is indexed using Smallworld for rapid search.
  242 bytes (32 words) - 19:24, 29 August 2022
• Mount smallworld disks
  538 bytes (84 words) - 23:18, 11 January 2021
• Smallworld and Arthor Databases
  This page details the databases on Smallworld and Arthor. == Smallworld slides/presentations ==
  5 KB (755 words) - 19:27, 13 June 2023
• Creating Maps on SmallWorld
  SmallWorld requires a /sw directory which contains /anon and /maps The /maps directory contains text files computed by SmallWorld that map your molecules of choice to the corresponding nodes in the anonymo
  10 KB (1,734 words) - 00:11, 9 January 2020
• SmallWorld Documentation for Future Developer
  ....com/downloads/smallworld/documentation/SmallWorld.pdf Here is the link to Smallworld's manual] All smallworld databases live in abacus' db3.
  12 KB (1,637 words) - 23:38, 1 May 2024
• How to use SmallWorld API
  ...b Services API for SmallWorld Documentation is found in Section 6.3 of the SmallWorld version 5.6.2 manual. [[Category: SmallWorld]]
  6 KB (917 words) - 02:14, 23 January 2024
• How to use Smallworld Java Command Line
  == How to use Smallworld Java Command Line == export sw='java -jar /nfs/db3/smallworld-5.5/sw.jar'
  5 KB (664 words) - 03:48, 22 February 2023

Page text matches

• Search
  ...y applications and Arthor for smarts/patterns and substructure. Arthor and Smallworld are accessible directly, as well as via Cartblanche20, Cartblanche22, ZINC2 * [[Smallworld and Arthor Databases]] -
  434 bytes (57 words) - 22:24, 12 April 2023
• CC:Smallworld
  Chemistry commons similarity search with smallworld Each [[chemistry commons]] library that is created is indexed using Smallworld for rapid search.
  242 bytes (32 words) - 19:24, 29 August 2022
• Caveat Emptor
  == missing in smallworld == * when using smallworld, be aware that only topologies that are indexed can be found. Thus in the c
  2 KB (262 words) - 19:31, 8 February 2023
• ZINC22:Contributors
  * John J Guttierez. Infrastructure. Curation of Smallworld and Arthor. * John Mayfield & Roger Sayle: Arthor and Smallworld.
  1 KB (167 words) - 01:45, 18 December 2020
• ZINC20:What's New
  * we use Smallworld and Arthor for search.
  225 bytes (37 words) - 02:15, 25 September 2020
• TLDR:swbatch
  Running multiple queries on SmallWorld. See https://sw.docking.org/search.html
  155 bytes (20 words) - 05:29, 9 August 2022
• Machine reponsibilities
  abacus - smallworld
  287 bytes (45 words) - 20:20, 15 March 2022
• Extended Search of Analogs via Bioisosteric Replacements
  ...sists of entering the SMILES of a molecule of interest into all flavors of SmallWorld and Arthor, available in the lab. This procedure has two drawbacks: # Limited diversity. SmallWorld's and Arthor's measure of distance between the analogs and the parent compo
  3 KB (538 words) - 06:41, 21 September 2023
• How to use Smallworld Java Command Line
  == How to use Smallworld Java Command Line == export sw='java -jar /nfs/db3/smallworld-5.5/sw.jar'
  5 KB (664 words) - 03:48, 22 February 2023
• Smallworld and Arthor Databases
  This page details the databases on Smallworld and Arthor. == Smallworld slides/presentations ==
  5 KB (755 words) - 19:27, 13 June 2023
• SmallWorld Documentation for Future Developer
  ....com/downloads/smallworld/documentation/SmallWorld.pdf Here is the link to Smallworld's manual] All smallworld databases live in abacus' db3.
  12 KB (1,637 words) - 23:38, 1 May 2024
• Tomcat Installation on CentOS 6
  The current public version of SmallWorld is ...start button to start it. Do not click undeploy unless you want to start SmallWorld with new source in the form of a new .war file.
  3 KB (489 words) - 02:22, 10 July 2020
• Creating Maps on SmallWorld
  SmallWorld requires a /sw directory which contains /anon and /maps The /maps directory contains text files computed by SmallWorld that map your molecules of choice to the corresponding nodes in the anonymo
  10 KB (1,734 words) - 00:11, 9 January 2020
• Manage Lab Websites
  |Smallworld Public: http://sw.docking.org/ |Smallworld Private: http://swp.docking.org/
  4 KB (591 words) - 19:24, 17 May 2023
• ZINC-22 Clean Up in Jan 2022
  * We are building/updating new smallworld and arthor indexes based on ZINC-22 2d-12. H04-H26 workaround is to look up in smallworld private.
  2 KB (346 words) - 17:18, 1 February 2022
• Chemistry commons
  ...for your target, you can search the libraries in 2D using Smallworld [[CC:Smallworld]] and Arthor [[CC:Arthor]] or in 3D using docking or other 3D methods. [[CC
  2 KB (326 words) - 19:18, 20 September 2023
• ZINC22:Getting started
  * molecules are index by Smallworld and searchable by whole molecule similarity using Graph-Edit Distance (GED)
  893 bytes (134 words) - 23:05, 3 August 2020
• New it team members
  * learn about maintaining databases for Smallworld and Arthor
  926 bytes (144 words) - 19:25, 19 March 2020
• Cartblanche22 Build Instructions
  Cartblanche relies on other outside services (smallworld, arthur, databases) so it’s good to check the status of those before loo For smallworld, check the status of api calls, or [https://sw.docking.org/search/view/?hli
  10 KB (1,558 words) - 18:49, 16 November 2023
• ZINC20:Getting started
  * We now use Smallworld and Arthor for database searching.
  877 bytes (134 words) - 02:13, 25 September 2020