Cluster 7

Introduction

A cluster built on Rocky 9 linux distribution which is under the RHEL umbrella.

How to Request for Access

Contact a system administrator.

How to Login

1. Remote

   ssh <user>@epsilon.compbio.ucsf.edu

2. On-premise

   ssh <user>@login02.compbio.ucsf.edu

SLURM Nodes

• To list partitions

  sinfo

• To list all nodes and their information

  sinfo -lNe

GPU Servers

gpu01

Global Modules/Software

• To check the list of available modules

  /* Long version */
  module available 
  
  /* OR */
  
  /* Short version */
  ml av

• To load a module(s)

  /* Single module */
  module load dock 
  
  /* OR */
  
  ml dock 
  
  ==================================
  
  /* Multi-module */
  module load dock python/3.12, schrodinger
  
  /* OR */
  
  ml dock python/3.12 schrodinger

• To list all loaded modules

  module load
  
  /* OR */
  
  ml

• To unload a module

  module unload <module>
  /* OR */
  ml unload <module>

• To unload all modules

  module purge 
  /* OR */
  ml purge