Cluster 1: Difference between revisions
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This cluster is defunct. Please use [[Cluster 2]]. | |||
= Status = | = Status = | ||
Cluster 1 is being wound down. '''Please plan to move your files to [[Cluster 2]] | Cluster 1 is being wound down. '''Please plan to move your files to [[Cluster 2]] asap.''' | ||
{{TOCright}} | {{TOCright}} | ||
| Line 18: | Line 18: | ||
/nfs/home/<userid>/ | /nfs/home/<userid>/ | ||
We expect you to run docking calculations in | We expect you to run docking calculations in work. 1TB default. Not backed up. | ||
/nfs/work/<userid>/ | /nfs/work/<userid>/ | ||
If you have large amounts of data you want kept, e.g. from the synchrotron, you may request repository space to keep it. Backed up. Size by agreement. | If you have large amounts of data you want kept, e.g. from the synchrotron, you may request repository space to keep it. Backed up. Size by agreement. Please compress your image files! | ||
/nfs/store/<userid>/ | /nfs/store/<userid>/ | ||
| Line 40: | Line 40: | ||
== routine access to cluster == | == routine access to cluster == | ||
* sgehead. includes [[csd]] license. | * sgehead. includes [[csd]] license. | ||
== pipeline pilot license == | == pipeline pilot license == | ||
| Line 69: | Line 69: | ||
* fawlty | * fawlty | ||
* towers | * towers | ||
== Cloud machines (hypervisor) == | == Cloud machines (hypervisor) == | ||
| Line 87: | Line 76: | ||
* Strangelove | * Strangelove | ||
* Rocky | * Rocky | ||
== 389 Server == | == 389 Server == | ||
* spinaltap | * spinaltap | ||
= Physical Machines = | = Physical Machines = | ||
== Rack 1 == | == Rack 1 == | ||
Currently in | Currently in Pharmacy 848. Totals: 448 cores for cluster. 128 cores for infrastructure. 60 TB RAID-10 formatted. (130 TB raw) | ||
* 3x ( Dell PowerEdge C6145. = 2 x ( 256 GB / 64 cores / 6 TB raw disk )) 64 x 2 x 3 = 384 cores. | * 3x ( Dell PowerEdge C6145. = 2 x ( 256 GB / 64 cores / 6 TB raw disk )) 64 x 2 x 3 = 384 cores. | ||
* HP disk head node, (25 TB raw disk systems ) x 4. | * HP disk head node, (25 TB raw disk systems ) x 4. | ||
* Dell disk head node x 1, Dell SAS 2TB x 8??. | * Dell disk head node x 1, Dell SAS 2TB x 8??. | ||
* DL165 x | * DL165 x 3. 8x3 = 24 cores. | ||
* Dell Switch: switch-1-1. | * Dell Switch: switch-1-1. | ||
* UPS | * UPS | ||
== Rack 2 == | == Rack 2 == | ||
Currently in Pharmacy | Currently in Pharmacy 848. | ||
* Dell PowerEdge C6145 | * Dell PowerEdge C6145 | ||
* Dell Switch: switch-2-1. | * Dell Switch: switch-2-1. | ||
== Wet Lab == | == Wet Lab == | ||
Donnelly 940. | Donnelly 940. | ||
* 4 instrument workstations | * 4 instrument workstations | ||
* | * 1 linux desktop HP Z420 | ||
* 1 windows7 desktop HP Z400 | * 1 windows7 desktop HP Z400 | ||
* 1 color printer | * 1 color printer | ||
| Line 149: | Line 106: | ||
== Dry Lab == | == Dry Lab == | ||
Donnelly 650 | Donnelly 650. | ||
* | * 8 linux desktops. HP Z420 | ||
[[About our cluster]] | [[About our cluster]] | ||
[[Category:Cluster]] | [[Category:Cluster]] | ||
[[Category:Internal]] | [[Category:Internal]] | ||
Latest revision as of 05:29, 3 June 2015
This cluster is defunct. Please use Cluster 2.
Status
Cluster 1 is being wound down. Please plan to move your files to Cluster 2 asap.
Toronto - our cluster
Obtaining credentials
For command line access to our cluster, please contact Teague, Therese or John for credentials. For your main email address, you may well use your gmail account or other public account for most purposes.
Disk usage conventions
We differentiate dockers from everyone else. If you are a full time member of the group, your disk space allocation will be like this:
Your home directory is for important or small files. 500 GB default. Backed up.
/nfs/home/<userid>/
We expect you to run docking calculations in work. 1TB default. Not backed up.
/nfs/work/<userid>/
If you have large amounts of data you want kept, e.g. from the synchrotron, you may request repository space to keep it. Backed up. Size by agreement. Please compress your image files!
/nfs/store/<userid>/
If you generate private databases, you may request /db/ space. Backup by arrangement. Size by agreement.
/nfs/db/<userid>/
If you have software you want to share, you may request /software/ space. backed up. 500 GB.
/nfs/software/<userid>/
Getting set up with lab software
svn co dockenv cp $SOFT/labenv.csh ~/.csh
OR
cp $SOFT/labenv.sh ~/.bashrc
for bash users.
Roles and Functions of Computers
routine access to cluster
- sgehead. includes csd license.
pipeline pilot license
- ppilot
Sysadmin
static web server
- runaway (vm on rocky)
- includes wiki, www
- NB was contact at some point, kinda liked that name for a webserver
- includes drupal
- includes wordpress
postgres server
- production: taxi
- intern: raiders
dynamic web server (ZINC, etc)
- oz
SEA server
- fawlty
- mysql server is on msqlserver aka inception
- fingerprint server is on fingerprint aka darkcrystal
NFS Disk servers
- fawlty
- towers
Cloud machines (hypervisor)
- Django
- Pulp
- Raiders
- Strangelove
- Rocky
389 Server
- spinaltap
Physical Machines
Rack 1
Currently in Pharmacy 848. Totals: 448 cores for cluster. 128 cores for infrastructure. 60 TB RAID-10 formatted. (130 TB raw)
- 3x ( Dell PowerEdge C6145. = 2 x ( 256 GB / 64 cores / 6 TB raw disk )) 64 x 2 x 3 = 384 cores.
- HP disk head node, (25 TB raw disk systems ) x 4.
- Dell disk head node x 1, Dell SAS 2TB x 8??.
- DL165 x 3. 8x3 = 24 cores.
- Dell Switch: switch-1-1.
- UPS
Rack 2
Currently in Pharmacy 848.
- Dell PowerEdge C6145
- Dell Switch: switch-2-1.
Wet Lab
Donnelly 940.
- 4 instrument workstations
- 1 linux desktop HP Z420
- 1 windows7 desktop HP Z400
- 1 color printer
- 3 Mac lab laptops
- 1 switch: switch-w-1
Dry Lab
Donnelly 650.
- 8 linux desktops. HP Z420