Category:Docking: Difference between revisions
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Docking | We use '''Molecular docking''' to screen large libraries of commercially available molecules to prioritize them for purchase or synthesis. | ||
In our lab, a large database of small molecules such as [[ZINC]] is screened using a docking program such as [[DOCK]]. Many other libraries and docking programs are available (below). The top-scoring compounds are reviewed in a [[hit picking party]] and then purchased and tested experimentally. | |||
* '''Our current version of DOCK is [[DOCK 3.8]]'''. | |||
* There is a second, independent version of DOCK [[DOCK 6.9]]. | |||
{{TOCright}} | |||
== Docking Programs == | |||
There are many docking programs. All of them have been successfully used for ligand discovery. The first three are from UCSF. | |||
* [[DOCK 3]] - latest version is [[DOCK 3.8]] - this is the version our group uses routinely. | |||
* [[DOCK 6]] - latest version is [[DOCK 6.9]] | |||
* [[DOCK 4]] | |||
* [http://www.schrodinger.com Glide] | |||
* [http://www.jainlab.org/ Surflex Dock] | |||
* [http://www.biosolveit.de FlexX] | |||
* [http://www.ccdc.cam.ac.uk GOLD] | |||
* [http://www.molsolft.com ICM] | |||
* [http://www.eyesopen.com FRED] | |||
* [http://www.chemcomp.com MOE] | |||
* [http://autodock.scripps.edu/ AutoDock] | |||
If we have forgotten your program, please add it here. | |||
The difference between the Docking category and the [[:Category:DOCK]] category is that DOCK is specific to our software, whereas Docking (this page) includes all docking programs and the approach in general. | |||
[[Category:Software]] | |||
[[Category:Topic]] | |||
[[Category:Organization]] | |||
Latest revision as of 18:20, 3 May 2021
We use Molecular docking to screen large libraries of commercially available molecules to prioritize them for purchase or synthesis.
In our lab, a large database of small molecules such as ZINC is screened using a docking program such as DOCK. Many other libraries and docking programs are available (below). The top-scoring compounds are reviewed in a hit picking party and then purchased and tested experimentally.
Docking Programs
There are many docking programs. All of them have been successfully used for ligand discovery. The first three are from UCSF.
- DOCK 3 - latest version is DOCK 3.8 - this is the version our group uses routinely.
- DOCK 6 - latest version is DOCK 6.9
- DOCK 4
- Glide
- Surflex Dock
- FlexX
- GOLD
- ICM
- FRED
- MOE
- AutoDock
If we have forgotten your program, please add it here.
The difference between the Docking category and the Category:DOCK category is that DOCK is specific to our software, whereas Docking (this page) includes all docking programs and the approach in general.
Subcategories
This category has the following 3 subcategories, out of 3 total.
Pages in category "Docking"
The following 46 pages are in this category, out of 46 total.