Category:SEA: Difference between revisions
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'''SEA''', the '''S'''imilarity '''E'''nsemble '''A'''pproach. The website is: [http://sea.bkslab.org/ sea.bkslab.org] | '''SEA''', the '''S'''imilarity '''E'''nsemble '''A'''pproach. The website is: [http://sea.bkslab.org/ sea.bkslab.org] | ||
==About== | ==About== | ||
'''SEA''' relates proteins based on the set-wise chemical similarity among their ligands. It can be used to rapidly search large compound databases and to build cross-target similarity maps. | '''SEA''' relates proteins based on the set-wise chemical similarity among their ligands. It can be used to rapidly search large compound databases and to build cross-target similarity maps. It is provided by the [[Shoichet Laboratory]] in the [[Department of Pharmaceutical Chemistry]] at the University of California, San Francisco ([[UCSF]]). | ||
== Citing SEA == | == Citing SEA == | ||
To cite SEA, please reference Keiser MJ, Roth BL, Armbruster BN, Ernsberger P, Irwin JJ, Shoichet BK. Relating protein pharmacology by ligand chemistry. Nat Biotech 25 (2), 197-206 (2007).<ref>[http://dx.doi.org/10.1038/nbt1284 Keiser MJ, Roth BL, Armbruster BN, Ernsberger P, Irwin JJ, Shoichet BK. Relating protein pharmacology by ligand chemistry. Nat Biotech 25 (2), 197-206 (2007)]</ref> | To cite SEA, please reference Keiser MJ, Roth BL, Armbruster BN, Ernsberger P, Irwin JJ, Shoichet BK. Relating protein pharmacology by ligand chemistry. Nat Biotech 25 (2), 197-206 (2007).<ref>[http://dx.doi.org/10.1038/nbt1284 Keiser MJ, Roth BL, Armbruster BN, Ernsberger P, Irwin JJ, Shoichet BK. Relating protein pharmacology by ligand chemistry. Nat Biotech 25 (2), 197-206 (2007)]</ref> | ||
Revision as of 22:51, 3 January 2019
SEA
| Paragigm | Docking |
|---|---|
| Developer | Shoichet Lab |
| Stable Version | SEA |
| Programming Language | TBD |
| Dependencies | TBD |
SEA, the Similarity Ensemble Approach. The website is: sea.bkslab.org
About
SEA relates proteins based on the set-wise chemical similarity among their ligands. It can be used to rapidly search large compound databases and to build cross-target similarity maps. It is provided by the Shoichet Laboratory in the Department of Pharmaceutical Chemistry at the University of California, San Francisco (UCSF).
Citing SEA
To cite SEA, please reference Keiser MJ, Roth BL, Armbruster BN, Ernsberger P, Irwin JJ, Shoichet BK. Relating protein pharmacology by ligand chemistry. Nat Biotech 25 (2), 197-206 (2007).[1]
Publications
Using the SEA website
Obtaining a private copy of SEA
Other topics
References
Pages in category "SEA"
The following 9 pages are in this category, out of 9 total.