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  1. 2dload
  2. 2dload.py
  3. 3D In Cori
  4. 3D Pipeline Explanation
  5. AB3
  6. AB3 Developer Notes
  7. ABBB
  8. ABBBR
  9. AMBER Score
  10. AMIS:Gene
  11. AWS
  12. AWS:Track costs
  13. AWS:Upload docking files to aws
  14. AWS Auto Scaling
  15. AWS DOCK Environment Setup Advanced Usage
  16. Activity data
  17. Adding Static Waters to the Protein Structure
  18. Adding memory to a virtual machine
  19. Adverse
  20. Aggregators
  21. All About DB2 Files
  22. Allosteric sites
  23. Allowing NFS through iptables/firewalld
  24. Amsol 7 patch
  25. Analyze ligand geometries using the Cambridge Structural Database (CSD)
  26. Analyzing DOCK 3.7 Results
  27. Anchor and Grow
  28. Another get poses.py
  29. Another getposes.py
  30. Api15
  31. Applications of DOCK
  32. Are critical points/spheres supported in my version of DOCK?
  33. Arkeia
  34. Assay Kits
  35. Asthma
  36. Atom Definition Rules
  37. AutoQSAR/DeepChem for billions of molecules
  38. Automating purchasability
  39. Automount/autofs
  40. BKS Networks
  41. BKS Oracle 10.2.0.1.0 LOG
  42. BKS lab Structure preparation
  43. Backup Scheme
  44. Basic Installation/Configuration of Server
  45. Ben DOCKAWS Notes
  46. Best:Desktop Usage
  47. Best database to screen
  48. Beta-setup
  49. Bioisostere Tool
  50. Bioisosteres
  51. Blacklist
  52. Blah
  53. Blastermaster (pydock3 script)
  54. Bonded Network Connections
  55. Bootstrap AUC
  56. Broken molecules 2017
  57. Btz
  58. Build ChEMBL for SEA
  59. Build new dock64 docker image
  60. Bump Filter
  61. CB DOCK 3.8 tutorial
  62. CB Iridium
  63. CCP4
  64. CLI Enumeration
  65. Cactvs
  66. Calculate DOCK6 RMSD
  67. Calculate ECFP4 using RDKit
  68. Calculate NPR values & Generate Heatmap
  69. Calculate RMSD between two sets of molecules (eg, Crystal pose vs. docked pose)
  70. Can DOCK6 write an info file as DOCK4 did?
  71. Cassidy clustering
  72. Catalyst
  73. Caveat Emptor
  74. CentOS 7 Base.repo
  75. Centos
  76. Cert-workaround
  77. Certificate
  78. ChEMBL
  79. ChEMBL API
  80. ChEMBL errata
  81. Cheat sheet
  82. Chem.defn
  83. Chem match.tbl
  84. Chembl2pdb
  85. Chembl filter out
  86. Chemdraw figure preparation
  87. Chemgrid
  88. Chemical Matching
  89. Chemistry commons Notes
  90. Chemoinformatics Waiver Wire
  91. Chemspace API
  92. Chimera Tutorial (AMPC)
  93. Chimera Tutorial (Delta opioid receptor)
  94. Choosing a subset
  95. Classic Dock References
  96. Clinical Trials
  97. Clinical Trials Loading
  98. Clinical trials and aggregation
  99. Cluster Security Monitoring Tools
  100. Coding tips DOCK 3.7
  101. Coloring and Subcluster Matching
  102. Command Line Arguments
  103. Comptuer assignments
  104. Conda environment issue
  105. Configure new disk
  106. Configuring an OpenSSH Server
  107. Contact
  108. Contact Score
  109. Continuous Score
  110. Continuous curation
  111. Contract Research Organizations
  112. Control of bkslab.org
  113. Conversion of .rxn files to reaction SMARTS
  114. Convert CD to an ISO Image
  115. Converting SMILES to Kekule Format
  116. Copy protect in google docs
  117. Copying files
  118. Covalent Library Preparation 2024
  119. Covalent library preparation 2023
  120. Covid19
  121. Create an aws ec2 image
  122. Create decoy tables
  123. Create new user
  124. Create venv
  125. Creating Maps on SmallWorld
  126. Creating clinical name mappings
  127. Critical Points
  128. Cron
  129. Curating AMIS
  130. Curating reactions
  131. Curation of ZINC-22 3D
  132. Current NFS Mounts
  133. DB2 File Format
  134. DNS Notes
  135. DOCK3.7 INDOCK Minimization Parameter
  136. DOCK38:Job configuration
  137. DOCK 3.5 Score
  138. DOCK 3.7 2016/09/16 abl1 Tutorial
  139. DOCK 3.7 2016/09/16 abl1 Tutorial(building)
  140. DOCK 6.9
  141. DOCK Blaster:1157
  142. DOCK Blaster:2389
  143. DOCK Blaster:50826
  144. DOCK Blaster:Alpha Test
  145. DOCK Blaster:CPU Time
  146. DOCK Blaster:Calibration docking
  147. DOCK Blaster:Download files
  148. DOCK Blaster:Failure with PDB code
  149. DOCK Blaster:Initial Evaluation
  150. DOCK Blaster:Input Troubleshooting
  151. DOCK Blaster:Interpreting Results
  152. DOCK Blaster:Other Input Options
  153. DOCK Blaster:Other Options
  154. DOCK Blaster:Philosophy
  155. DOCK Blaster:Prepare Ligand
  156. DOCK Blaster:Reliability
  157. DOCK Blaster:Results
  158. DOCK Blaster:Results Browser
  159. DOCK Blaster:Sample Data
  160. DOCK Blaster:Sample data
  161. DOCK Blaster:Suggestions
  162. DOCK Blaster:Technical Details
  163. DOCK Blaster:Timings
  164. DOCK Overview
  165. DOCK memory and CPU benchmark
  166. DOCK on cygwin
  167. DOCKovalent cysteine inhibitor design tutorial
  168. DOCKovalent linker design tutoral
  169. DOCKovalent linker design tutorial
  170. DOCKovalent lysine inhibitor design tutorial
  171. DOCKovalent lysine inihibitor design tutorial
  172. DOWNLOAD PKV GAMES APK ANDROID IOS
  173. Data Sources for ZINC15
  174. Database Filter
  175. Database Preparation
  176. Datawarrior
  177. Daylight
  178. Debugging
  179. Dell PowerConnect 6248 Switch
  180. Dependencies
  181. Deploy SEA from github via puppet
  182. Dimorphite-DL
  183. Disk Quotas
  184. Disk full
  185. Dock development
  186. Dockable metabolites libraries
  187. Docking.org
  188. Docking.org management
  189. Docking Analysis in DOCK3.8
  190. Docking configuration
  191. Docking for experts
  192. Docking for non-experts
  193. Docking in AWS With DOCK 3.8
  194. Docking programs
  195. Docktools
  196. Download by catalog
  197. Downloading purchasing information
  198. DrugBank
  199. Drugs
  200. Drugs sans targets
  201. Drupal
  202. DxTRx
  203. EMolecules
  204. Editing VMs with virsh
  205. Ellman libraries
  206. Enable su
  207. Enabling Bitlocker Encryption on Windows 10
  208. Enabling IP routing
  209. Enm explorer
  210. Enzyme Specificity Project
  211. Erice:Feynman hall
  212. Erice:Library
  213. Erice:Madonna room
  214. Erice:San domenico
  215. Erice:Tower room
  216. Example of Disorder
  217. Extended Search of Analogs via Bioisosteric Replacements
  218. FAQ:AMBERHOME
  219. FAQ:MPICH2
  220. FAQ:mmolex
  221. FEP+ for GPCR
  222. Failures of ECFP4 Part 1
  223. FastROCS Server
  224. Features of your target structure
  225. Filter.py:
  226. Filtering ligands for novelty
  227. Find
  228. Firewalld
  229. Flash on Linux
  230. FlexPepDock
  231. Flex drive.tbl
  232. Flexibase Format
  233. Flexible Docking
  234. Flexible Docking: tarting and thin spheres
  235. Flexible docking code
  236. Flushing the cache
  237. Forgotten root password
  238. Format And Mount local2
  239. Format Conversion
  240. Formatting an drive for use in Linux
  241. GPCR Waiver Wire
  242. GPU DOCK
  243. General Information
  244. General zinc15 curation
  245. Generating Decoys (DUDE-Z)
  246. Generating decoys (DUDE-Z)
  247. Generating decoys (Reed's way)
  248. Generating extrema set
  249. Genes
  250. Genes with no purchasable ligands
  251. Get custom library
  252. Get msms
  253. Getting started with the dock blaster toolchain
  254. Getting starting in irwinlab
  255. Global Matching Sphere Optimization
  256. Globus Curator's Guide
  257. Good binding site
  258. Google patents
  259. Google sheets hit picking
  260. Gpus
  261. Grant number
  262. Greatest hits
  263. Grid-convert
  264. Grid Based Score
  265. HMDB
  266. HP Computer Startup Issues
  267. HP Pro Network Switches
  268. HTTPD Semaphore/Mutex Lock Problem
  269. Hawkins GB/SA Score
  270. Heather's notes
  271. Heatmap tool
  272. How I Migrated Wiki from Centos 6 to Centos 7
  273. How To Connect To Printers
  274. How To Load New ZINC Databases
  275. How to Backup a Hypervisor
  276. How to Change the Password for a User Command Line LDAP:
  277. How to Check Harddrive information
  278. How to Create Cluster 7 (Ubuntu 20.04)
  279. How to Create Encrypted Password
  280. How to Create a Hypervisor
  281. How to Expand the Hard Drive Size of a VM
  282. How to Fix Monitor Outputting "OUT OF RANGE SIGNAL, CANNOT DISPLAY VIDEO MODE"
  283. How to Fix the VNC Viewer in Foreman
  284. How to Format an External Hard Drive on Linux that is compatible with other OS
  285. How to Get Minicom to Work on a Mac
  286. How to Install Nagios
  287. How to Install SmartsEditor on CentOS6
  288. How to Install a Desktop on Cluster 2
  289. How to Install an LDAP 389 Master Server
  290. How to Make Your Own yum Repo
  291. How to Migrate a Virtual Machine
  292. How to Print Screen on a Mac
  293. How to Relay Emails to Gmail
  294. How to Replace a Failed Disk
  295. How to Secure Single Mode Linux
  296. How to See What Something Resolves to
  297. How to See Who is Running the Most on a Raid
  298. How to Set Up Webalizer
  299. How to Setup / Edit Quotas
  300. How to access X11 Forwarding after becoming root
  301. How to add new users
  302. How to change the hostname of a machine
  303. How to check RAM details
  304. How to cite
  305. How to create a iso image from command line
  306. How to create a vpn/ssh tunnel
  307. How to create actives and decoys for dockopt
  308. How to do indexing, partition, and migration in Postgres 10
  309. How to do parallel search of smi files on the cluster
  310. How to do parameter scanning
  311. How to download zinc-22 using rsync
  312. How to generate ssh keys securely
  313. How to install and configure JupyterHub
  314. How to install and configure R Shiny
  315. How to install python virtualenv
  316. How to link to ZINC
  317. How to process results from a large-scale docking
  318. How to protonate a receptor for docking?
  319. How to run DOCK with a focusing term (internal energy) included
  320. How to spin up a new virtual machine
  321. How to use Arthor API
  322. How to use Arthor Command Line
  323. How to use Blastermaster 2.0 on UCSF computers
  324. How to use Globus
  325. How to use SmallWorld API
  326. How to use Smallworld Java Command Line
  327. How to use tar for archive & compression
  328. How to use the sed command
  329. How to write a puppet config
  330. Hpacucli
  331. ICD10 questions
  332. IRECS
  333. Identification of Flexible Layers
  334. Identification of rigid segments
  335. If you accidentally delete a disk image while VM is still running
  336. InChIs in ZINC15
  337. Inspecting electron density maps
  338. Install Acroread
  339. Install DOCK 3
  340. Install DOCK 6
  341. Install Miniconda
  342. Install Phenix
  343. Install Schrodinger Suite in local computer
  344. Installer
  345. Installing AMSOL
  346. Installing DOCK6 on Apple Silicon M2
  347. Installing New Server in Cluster
  348. Installing The 3D Pipeline ZINC22
  349. Installing libreoffice
  350. Installing msms
  351. Installing oracle
  352. Interacting with Chemaxon dataset
  353. Interaction Filtering
  354. Interactive ligands visualizer
  355. Internal Energy Calculation
  356. Ipynb idioms
  357. JUDI ONLINE INDONESIA
  358. Java & CentOS 6.3
  359. Java and R
  360. Jerome Hert
  361. Jji-ts-2d-loading
  362. Jji jeremy
  363. John's Tips
  364. Journals
  365. JupyterNotebook
  366. JupyterNotebook Guide
  367. Jérôme Hert
  368. KEGG
  369. KVM: Live Migration of Virtual Machine
  370. Knime
  371. LSI RAID Management
  372. LUNA
  373. LVM: Logical Volume Manager
  374. Lab Virtual Machines
  375. Lab Website
  376. Lab ordering system
  377. Large-scale SMILES Requesting and Fingerprints Converting
  378. Large-scale SMILES requesting
  379. Ldap admin
  380. Ldap workaround
  381. Ligand File I/O
  382. Ligand based methods
  383. Ligand desolvation
  384. Ligand preparation - 20170424
  385. Linux Permissions
  386. Linux device management
  387. List of Docking.org websites
  388. LoadingZINC15
  389. LoadingZINC21
  390. Loading And Creating ZINC Partitions Automatically
  391. Loading ZINC12
  392. LogAUC
  393. LogP vs logD
  394. Log Rotate
  395. MODBASE
  396. Machine reponsibilities
  397. Macromolecular Docking
  398. Mailing address for the Shoichet lab
  399. Major themes of this website
  400. Making movies
  401. Manage Lab Websites
  402. Manual Specification of Non-Rotatable Bonds
  403. Manually Synchronizing MySQL
  404. March2019 protocol
  405. Matching Sphere Scan
  406. Mem2
  407. Membrane Modeling
  408. Metabolite clustering
  409. Metabolites
  410. Methods section
  411. Micromedex
  412. Minimization
  413. Minimize protein-covalent ligand complex with AMBER
  414. Minimize protein-ligand complex with AMBER
  415. Model ensemble setup
  416. Mol2
  417. Mol2db2 Format 2
  418. Monitoring Memory
  419. More cool zinc15 tricks
  420. Mount smallworld disks
  421. Move foreman from sqlite to mysql
  422. NCI Platted
  423. Nailgun
  424. Natural products
  425. Natural products type
  426. Nchemgrids
  427. Network Access Control
  428. Network configuration
  429. New 3D Building On Wynton
  430. New hartwig libraries
  431. New it team members
  432. New zinc15 questions
  433. No viable poses
  434. Nobody
  435. Nvidia Kernel Modules
  436. OCI:Create account
  437. OCI:More work
  438. OCI:install client locally
  439. OCI Slurm Autoscaling
  440. Official file locations
  441. Olivier's way of computing novelty
  442. Omega
  443. Omega.parm
  444. Omega.py
  445. One page paper
  446. One time funky gene name cleanup
  447. Ontology
  448. OpenBabel
  449. OpenSGE
  450. Open Source Software
  451. Open Source by Pharma
  452. Open data
  453. Open source
  454. Open standards
  455. Openeye python libraries
  456. Oracle scraps
  457. Orphan target
  458. Other docking servers
  459. Otrs maintenance
  460. Output
  461. PAINS
  462. PBSA Score
  463. PDB
  464. PIN Policy
  465. Parallel Processing
  466. Parameter Files
  467. Parameter Parser
  468. Partial indexes
  469. Particle Shape Calculator for CCDC/Mercury
  470. Pattern and reaction curation
  471. Performance testing
  472. Performing a Query on 22B Molecules
  473. Personal backup disk
  474. Phenix
  475. Physical property space
  476. Pka
  477. Portland Group notes
  478. PostgreSQL configuration
  479. Predict protein function by docking
  480. Prepare a receptor with a cofactor for docking
  481. Preparing dockfiles using TLDR
  482. Preparing the ligand
  483. Privacy policy
  484. Private addresses
  485. Problematic Machines
  486. Programming DOCK 3.8
  487. Programs that work well with ZINC15
  488. Properties
  489. Protein-Protein Docking
  490. Protein Target Preparation Updated
  491. Pruning the conformation tree
  492. Psicquic channels
  493. Psql idioms
  494. PubChem in ChEMBL
  495. Public face
  496. Public servers 2021
  497. PuppetTricks
  498. Pushing Docker Image To AWS
  499. PyMol
  500. Pymol background

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