Welcome group members
Welcome to the lab. This page is designed for new group members, our collaborators and anyone else who wishes to access our cluster via ssh.
Guides
As you know, we have two labs, one in Toronto and one in San Francisco. Moreover, in each location there are shared clusters that we have access to. We take up each in turn.
- Cluster 1 - Toronto Cluster - Therese can set you up.
- Apply for SciNet Account - if you need it
- Cluster 0 - Legacy UCSF cluster - Therese can set you up.
- Cluster 2 - new UCSF cluster - not ready yet.
- UCSF Shared Cluster] - if you need it. Teague can help you get set up.
Access from home
How to generate ssh keys securely
How_to_create_a_vpn/ssh_tunnel
Good habits
Set aside a quiet time every month to review your disk usage, and compress, delete or move excessive usage.
Synchrotron trips
We can help arrange to store your data in a safe place. Ask before you leave.
When you leave the lab
Please discuss with Teague or Therese or John one month before you leave the lab to agree on which of your files will remain. We can provide you with portable disks so you can take software and data with you, if you like. If you want to take the lab software with you, we can help with that too.
Computational Resources
- CSD
- ppilot
- openeye
- cactvs
Misc
Brenda is at /raid5/backonce/joha/DB3/5_BRENDA2SDF/ORG_BRENDA_MOL_FILES_PREP/brenda_031306.ism mysql is at mysql -u joha -p*secret* -h (brenda-machine-name-ask-jji) brenda wombat is at ~jerome/sets/wombat/wombat_20062/wombat.20062.sdf.gz