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  • #REDIRECT [[DOCK Blaster:Tutorial 1]]
    37 bytes (4 words) - 20:33, 8 October 2012
  • 950 bytes (148 words) - 06:46, 13 March 2014
  • Characterizing the β-lactamase binding site Chimera tutorial
    2 KB (283 words) - 18:12, 9 January 2017
  • ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:24, 12 March 2014
  • 3 KB (392 words) - 18:37, 15 December 2022
  • ...to Mineralocorticoid receptor''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    6 KB (878 words) - 03:24, 12 March 2014
  • '''DOCK Blaster Tutorial 1. Dock to Human Thyroid Hormone Receptor Beta-1 (TR beta)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]].
    2 KB (302 words) - 02:22, 11 January 2019
  • 6 KB (1,016 words) - 16:46, 19 August 2020
  • 129 bytes (19 words) - 18:07, 15 February 2014
  • ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:23, 12 March 2014
  • This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial
    7 KB (903 words) - 20:08, 18 June 2018
  • ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:23, 12 March 2014
  • ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:23, 12 March 2014
  • ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:24, 12 March 2014
  • 1 KB (175 words) - 16:16, 2 October 2017
  • This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial
    7 KB (903 words) - 16:52, 11 April 2019
  • Tutorial by Trent Balius (2017/01/30). This tutorial assumes that you have already completed the MD tutorial [[Tutorial on running Molecular Dynamics for GIST grid generation with scripts]].
    18 KB (2,525 words) - 01:31, 16 November 2017
  • This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial
    9 KB (1,113 words) - 22:23, 20 March 2023
  • This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial
    7 KB (905 words) - 22:22, 20 March 2023
  • 774 bytes (123 words) - 19:39, 17 November 2017
  • The focus of this tutorial is to perform a retrospective enrichment calculations and a test virtual sc == This part of the tutorial uses the release version of DOCK3.7-beta.1.0.1. ==
    9 KB (1,429 words) - 23:37, 26 April 2016
  • ...il 17, 2015. This tutorial is now superseded by[[DOCK 3.7 2018/06/05 abl1 Tutorial]]. See the following tutorial for updated scripts:
    28 KB (4,315 words) - 21:05, 19 October 2023
  • This tutorial uses the DOCK-3.7-beta3.
    476 bytes (77 words) - 23:56, 16 September 2016
  • This tutorial use the 3.7.2 beta version of dock release on April 17, 2015. This part of the tutorial is tailored for shoichet lab use. An outside user of dock might need to de
    27 KB (4,088 words) - 21:04, 19 October 2023
  • ...15 abl1 Tutorial. Former one works well and is very simple and clear. This tutorial mentions some updates in job submissions.
    7 KB (1,019 words) - 00:16, 18 September 2016
  • Tutorial written by Trent Balius (Jan. 9, 2017). To use this tutorial you will need the following:
    26 KB (4,023 words) - 00:21, 5 March 2019
  • 7 KB (931 words) - 15:31, 3 October 2017
  • Tutorial written by Trent Balius (Jan. 9, 2017). To use this tutorial you will need the following:
    49 KB (7,168 words) - 00:18, 9 November 2017
  • 5 KB (793 words) - 16:26, 3 May 2017
  • ...abl1 Tutorial]]. Former one works well and is very simple and clear. This tutorial mentions some updates in job submissions.
    7 KB (1,063 words) - 01:59, 19 September 2016

Page text matches

  • * [[ZINC:Tutorial 1]] - Download a property-filtered database subset for virtual screening * [[ZINC:Tutorial 2]] - Download a vendor database subset for virtual screening
    486 bytes (65 words) - 00:46, 5 January 2019
  • * [[Tutorial on running Molecular Dynamics for GIST grid generation]] * [[Tutorial on running Molecular Dynamics for GIST grid generation with scripts]]
    437 bytes (61 words) - 19:56, 15 November 2017
  • * Tutorial 1: [[AWS:Set up account]] * Tutorial 2: [[AWS:Upload files for docking]]
    1 KB (215 words) - 21:29, 14 September 2022
  • *[[Chimera Tutorial (AMPC)]] *[[Chimera Tutorial (Delta opioid receptor)]]
    387 bytes (49 words) - 18:19, 9 January 2017
  • #REDIRECT [[DOCK Blaster:Tutorial 1]]
    37 bytes (4 words) - 20:33, 8 October 2012
  • * Tutorial Below is the tutorial that I find very useful for getting started
    1 KB (151 words) - 18:06, 10 October 2019
  • ...cient information, and excessive information. The level of effort for the tutorial is either easy, moderate, or hard. = [[DOCK Blaster:Tutorial 1 | Dock to human thyroid hormone beta-1]] =
    4 KB (523 words) - 20:02, 8 October 2012
  • [[Category:Tutorial]]
    362 bytes (55 words) - 04:24, 22 July 2015
  • '''DOCK Blaster Tutorial 1. Dock to Human Thyroid Hormone Receptor Beta-1 (TR beta)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]].
    2 KB (302 words) - 02:22, 11 January 2019
  • * Tutorial 1: [[AWS:Set up account]] * Tutorial 2: [[AWS:Upload files for docking]] THIS TUTORIAL
    5 KB (797 words) - 22:10, 11 October 2022
  • This tutorial applies to RHEL 8 based operating systems (CentOS, Rocky Linux) ...stfix/#Error-1_SASL_authentication_failure_No_worthy_mechs_found Reference Tutorial]'''
    2 KB (354 words) - 22:43, 1 September 2022
  • *[[Chimera Tutorial (AMPC)]] *[[Chimera Tutorial (Delta opioid receptor)]]
    1 KB (180 words) - 10:10, 24 March 2020
  • This tutorial uses the DOCK-3.7-beta3.
    476 bytes (77 words) - 23:56, 16 September 2016
  • * [[DOCKovalent lysine inhibitor design tutorial]] * [[DOCKovalent cysteine inhibitor design tutorial]]
    6 KB (844 words) - 17:03, 27 July 2021
  • [[Category:Tutorial]]
    1 KB (159 words) - 16:20, 8 July 2015
  • ...nloaded from www.cgl.ucsf.edu, can add hydrogens to receptors. There is a tutorial on our web site at dock.compbio.ucsf.edu that goes through how to prepare a
    719 bytes (124 words) - 17:29, 15 February 2014
  • This tutorial shows how to install R Shiny on Centos 7.
    1 KB (139 words) - 23:45, 16 July 2018
  • See this tutorial for AMBER minimization:
    931 bytes (119 words) - 19:02, 12 April 2019
  • * Tutorial 1: [[AWS:Set up account]] * Tutorial 2: [[AWS:Upload files for docking]]
    6 KB (897 words) - 21:30, 14 September 2022
  • * Do the infamous tutorial
    926 bytes (144 words) - 19:25, 19 March 2020
  • * Tutorial 1 AWS:Set up account THIS TUTORIAL * Tutorial 2: [[AWS:Upload files for docking]]
    8 KB (1,333 words) - 20:38, 19 October 2022
  • * Tutorial 1 OCI:Set up account THIS TUTORIAL * Tutorial 2: [[OCI:Upload files for docking]]
    8 KB (1,318 words) - 18:35, 22 March 2023
  • [[Category:Tutorial]]
    1 KB (220 words) - 03:50, 23 July 2015
  • This tutorial shows how to install and configure JupyterHub on Centos 7.
    1 KB (224 words) - 23:51, 16 July 2018
  • ...ow small your radius is. You can check your protein preparation using this tutorial: ==Tutorial for using Thin Spheres in DOCK 3.7.1rc1==
    6 KB (852 words) - 12:41, 4 September 2019
  • Follow the tutorial [[Large-scale SMILES Requesting and Fingerprints Converting]] to get the sm
    1 KB (199 words) - 15:51, 19 September 2017
  • [[Category:Tutorial]]
    1 KB (179 words) - 04:21, 1 October 2015
  • ...to Mineralocorticoid receptor''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    6 KB (878 words) - 03:24, 12 March 2014
  • ...d from SIRAS phasing using Buccaneer, and examining the model in Coot. The tutorial will also cover phase improvement using DM and simple refinement using Refm http://www.ysbl.york.ac.uk/~ccp4mg/ccp4mg_help/tutorial/index.html
    4 KB (580 words) - 20:17, 8 October 2012
  • ...ontend can be used for viewing and modifying the aggregator database. This tutorial demonstrates how to use JCman UI from the local machine.
    1 KB (158 words) - 18:05, 15 February 2014
  • ...out single rotatable bonds is one of the most common uses of the CSD. This tutorial illustrates how '''Mogul''', part of the CSD software can be used to rapidl
    1 KB (180 words) - 23:16, 21 May 2019
  • Here are questions you can ask. Ideally, work these into a tutorial of some kind:
    2 KB (325 words) - 00:11, 1 February 2017
  • * Tutorial 1: [[AWS:Set up account]] * Tutorial 2: [[AWS:Upload files for docking]]
    8 KB (1,398 words) - 22:11, 11 October 2022
  • Here is the tutorial for the setup script for DOCK3
    1 KB (231 words) - 02:11, 6 April 2019
  • ...15 abl1 Tutorial. Former one works well and is very simple and clear. This tutorial mentions some updates in job submissions.
    7 KB (1,019 words) - 00:16, 18 September 2016
  • Tutorial on visualizing [[Delphi]] and understanding electrostatic scoring in [[DOCK
    1 KB (236 words) - 18:50, 15 February 2014
  • This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial
    9 KB (1,113 words) - 22:23, 20 March 2023
  • ...abl1 Tutorial]]. Former one works well and is very simple and clear. This tutorial mentions some updates in job submissions.
    7 KB (1,063 words) - 01:59, 19 September 2016
  • ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:23, 12 March 2014
  • ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:23, 12 March 2014
  • ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:23, 12 March 2014
  • ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:24, 12 March 2014
  • ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:24, 12 March 2014
  • The focus of this tutorial is to perform a retrospective enrichment calculations and a test virtual sc == This part of the tutorial uses the release version of DOCK3.7-beta.1.0.1. ==
    9 KB (1,429 words) - 23:37, 26 April 2016
  • ...nbook.red-bean.com/nightly/en/svn.branchmerge.html Chapter 4, Official SVN tutorial] ...ve tutorial, see the [http://svnbook.red-bean.com/nightly/en/ Official SVN tutorial]
    7 KB (1,204 words) - 13:31, 23 April 2014
  • ...rgy intermediate forms is described in a [[How to generate an HEI database|tutorial]].
    2 KB (252 words) - 15:22, 11 March 2014
  • This tutorial is for requesting a large number of SMILES for docking results from ZINC se
    3 KB (369 words) - 23:01, 18 September 2017
  • This tutorial is for requesting a large number of SMILES for docking results from ZINC se
    3 KB (375 words) - 01:34, 19 September 2017
  • This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial
    7 KB (903 words) - 00:21, 6 April 2018
  • This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial
    7 KB (903 words) - 16:52, 11 April 2019
  • This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial
    7 KB (903 words) - 20:08, 18 June 2018
  • This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial
    7 KB (905 words) - 22:22, 20 March 2023
  • ...you have run this script, you can visualize your spheres by following this tutorial:
    2 KB (386 words) - 20:17, 27 May 2020
  • This tutorial describes how to use CartBlanche22.docking.org to select chemical space for
    2 KB (314 words) - 18:52, 9 August 2022
  • ...s for the knowns and the clusterheads that were calculated in the previous tutorial: [http://wiki.bkslab.org/index.php/How_to_process_results_from_a_large-scal
    3 KB (480 words) - 18:49, 15 March 2019
  • Characterizing the β-lactamase binding site Chimera tutorial
    2 KB (283 words) - 18:12, 9 January 2017
  • Tutorial on how to prepare files for Dock Blaster using Chimera (it uses snapshot 23
    2 KB (435 words) - 20:25, 8 October 2012
  • ...s a [https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/tutorials/vdtut.html tutorial] on the Chimera web pages.
    8 KB (521 words) - 16:58, 16 April 2020
  • This tutorial will introduce you to the morphology calculation features included For the purposes of this tutorial, we will keep the default options. These
    7 KB (1,199 words) - 21:25, 23 May 2023
  • How to run DOCK/LSD in AWS, follow our tutorial, starting with setting up an AWS account. [[AWS:Set up account]]
    3 KB (413 words) - 17:06, 8 April 2023
  • This tutorial uses the DOCK3.7.1rc1.
    3 KB (522 words) - 22:39, 26 March 2019
  • Follow the steps on this tutorial https://www.itzgeek.com/how-tos/linux/centos-how-tos/install-apache-tomcat-
    3 KB (489 words) - 02:22, 10 July 2020
  • file for the ligand (see [[Structure Preparation Tutorial]])
    4 KB (576 words) - 23:28, 23 March 2016
  • This tutorial shows how to do parallel search of smi files on the cluster. The files and
    4 KB (536 words) - 18:02, 19 July 2018
  • ...techamber to prepare a MOL2 file for the ligand (see Structure Preparation Tutorial) or various other visualization packages. During the docking procedure, lig
    5 KB (691 words) - 17:48, 15 February 2014
  • Tutorial by Trent Balius (2017/01/30). This tutorial assumes that you have already completed the MD tutorial [[Tutorial on running Molecular Dynamics for GIST grid generation with scripts]].
    18 KB (2,525 words) - 01:31, 16 November 2017
  • ...tion systems, such as kerberos, are fine, but are beyond the scope of this tutorial.
    3 KB (532 words) - 18:32, 22 September 2014
  • Use the tutorial above instead. Or use this link to run blastermaster manually:
    6 KB (775 words) - 20:04, 21 September 2021
  • ...w now, which will minimize it to your notifications bar (on windows). This tutorial shows how to set up a Bitvise client, but these steps can also be applied t
    4 KB (720 words) - 21:37, 28 March 2020
  • If you followed the tutorial above, you may have noticed that the create-aws-batch-env.bash script was p
    6 KB (1,036 words) - 17:51, 28 July 2022
  • # [https://netways.github.io/foreman-training/static/#1 Here's a tutorial on Foreman]
    7 KB (785 words) - 22:36, 26 October 2021
  • ...il 17, 2015. This tutorial is now superseded by[[DOCK 3.7 2018/06/05 abl1 Tutorial]]. See the following tutorial for updated scripts:
    28 KB (4,315 words) - 21:05, 19 October 2023
  • ...enerated by the automatic way, you should be able to change them based the tutorial in this section. The last column of each matching sphere is a number that y
    8 KB (878 words) - 20:37, 12 April 2022
  • Here is the tutorial for building a ChEMBL for SEA based from Matt O'Meara's scripts
    6 KB (922 words) - 21:19, 22 June 2023
  • ...hange the radius in the "vdw.siz" file and then run QNIFFT again - see the tutorial on Parameter Scanning: ...statics.phi" files into DX files for opening in Chimera. See the following tutorial for visualizing electrostatics grids:
    16 KB (2,467 words) - 18:59, 10 October 2019
  • ...e premade db2.tgz files, for example from the zinc22 3D archive, start the tutorial here. ...this example is a suggestion applicable only if you've been following the tutorial up to this point.
    16 KB (2,599 words) - 22:28, 1 December 2022
  • This tutorial is for Shoichet Lab group members but we hope that it might be useful to th
    7 KB (1,147 words) - 01:34, 15 December 2018
  • The current version at the time of this tutorial is 22.05.5
    8 KB (1,109 words) - 20:27, 22 March 2024
  • This tutorial shows how to do data migration, partition, and indexing in Postgres 10.
    10 KB (1,395 words) - 22:16, 3 August 2018
  • All scripts for this tutorial can be found in:
    14 KB (2,220 words) - 07:49, 23 September 2022
  • The rest of the tutorial will assume DOCKBASE is set.
    10 KB (1,665 words) - 14:36, 29 July 2019
  • This tutorial use the 3.7.2 beta version of dock release on April 17, 2015. This part of the tutorial is tailored for shoichet lab use. An outside user of dock might need to de
    27 KB (4,088 words) - 21:04, 19 October 2023
  • ...give them a quick look before committing to a larger ensemble. There is a tutorial [https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/tutorials/dor.html here].
    12 KB (1,840 words) - 01:13, 1 June 2017
  • Tutorial written by Trent Balius (Jan. 9, 2017). To use this tutorial you will need the following:
    26 KB (4,023 words) - 00:21, 5 March 2019
  • Tutorial written by Trent Balius (Jan. 9, 2017). To use this tutorial you will need the following:
    49 KB (7,168 words) - 00:18, 9 November 2017