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This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial

This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial

...you have run this script, you can visualize your spheres by following this tutorial:

This tutorial describes how to use CartBlanche22.docking.org to select chemical space for

...s for the knowns and the clusterheads that were calculated in the previous tutorial: [http://wiki.bkslab.org/index.php/How_to_process_results_from_a_large-scal

Characterizing the β-lactamase binding site Chimera tutorial

Tutorial on how to prepare files for Dock Blaster using Chimera (it uses snapshot 23

...s a [https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/tutorials/vdtut.html tutorial] on the Chimera web pages.

This tutorial will introduce you to the morphology calculation features included For the purposes of this tutorial, we will keep the default options. These

How to run DOCK/LSD in AWS, follow our tutorial, starting with setting up an AWS account. [[AWS:Set up account]]

This tutorial uses the DOCK3.7.1rc1.

Follow the steps on this tutorial https://www.itzgeek.com/how-tos/linux/centos-how-tos/install-apache-tomcat-

file for the ligand (see [[Structure Preparation Tutorial]])

This tutorial shows how to do parallel search of smi files on the cluster. The files and

...techamber to prepare a MOL2 file for the ligand (see Structure Preparation Tutorial) or various other visualization packages. During the docking procedure, lig

Tutorial by Trent Balius (2017/01/30). This tutorial assumes that you have already completed the MD tutorial [[Tutorial on running Molecular Dynamics for GIST grid generation with scripts]].

...tion systems, such as kerberos, are fine, but are beyond the scope of this tutorial.

Use the tutorial above instead. Or use this link to run blastermaster manually:

...w now, which will minimize it to your notifications bar (on windows). This tutorial shows how to set up a Bitvise client, but these steps can also be applied t

If you followed the tutorial above, you may have noticed that the create-aws-batch-env.bash script was p

# [https://netways.github.io/foreman-training/static/#1 Here's a tutorial on Foreman]

...il 17, 2015. This tutorial is now superseded by[[DOCK 3.7 2018/06/05 abl1 Tutorial]]. See the following tutorial for updated scripts:

...enerated by the automatic way, you should be able to change them based the tutorial in this section. The last column of each matching sphere is a number that y

Here is the tutorial for building a ChEMBL for SEA based from Matt O'Meara's scripts

...hange the radius in the "vdw.siz" file and then run QNIFFT again - see the tutorial on Parameter Scanning: ...statics.phi" files into DX files for opening in Chimera. See the following tutorial for visualizing electrostatics grids:

...e premade db2.tgz files, for example from the zinc22 3D archive, start the tutorial here. ...this example is a suggestion applicable only if you've been following the tutorial up to this point.

This tutorial is for Shoichet Lab group members but we hope that it might be useful to th

The current version at the time of this tutorial is 22.05.5

This tutorial shows how to do data migration, partition, and indexing in Postgres 10.

All scripts for this tutorial can be found in:

The rest of the tutorial will assume DOCKBASE is set.

This tutorial use the 3.7.2 beta version of dock release on April 17, 2015. This part of the tutorial is tailored for shoichet lab use. An outside user of dock might need to de

...give them a quick look before committing to a larger ensemble. There is a tutorial [https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/tutorials/dor.html here].

Tutorial written by Trent Balius (Jan. 9, 2017). To use this tutorial you will need the following:

Tutorial written by Trent Balius (Jan. 9, 2017). To use this tutorial you will need the following: