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  • Tutorial 1
    #REDIRECT [[DOCK Blaster:Tutorial 1]]
    37 bytes (4 words) - 20:33, 8 October 2012
  • Basic Tutorial
    950 bytes (148 words) - 06:46, 13 March 2014
  • Chimera Tutorial (AMPC)
    Characterizing the β-lactamase binding site Chimera tutorial
    2 KB (283 words) - 18:12, 9 January 2017
  • DOCK Blaster:Tutorial 7
    ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:24, 12 March 2014
  • CB DOCK 3.8 tutorial
    3 KB (392 words) - 18:37, 15 December 2022
  • DOCK Blaster:Tutorial 8
    ...to Mineralocorticoid receptor''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    6 KB (878 words) - 03:24, 12 March 2014
  • DOCK Blaster:Tutorial 1
    '''DOCK Blaster Tutorial 1. Dock to Human Thyroid Hormone Receptor Beta-1 (TR beta)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]].
    2 KB (302 words) - 02:22, 11 January 2019
  • DOCK 3.7 tutorial (Anat)
    6 KB (1,016 words) - 16:46, 19 August 2020
  • DOCK Blaster:Tutorial 3
    129 bytes (19 words) - 18:07, 15 February 2014
  • DOCK Blaster:Tutorial 4
    ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:23, 12 March 2014
  • DOCKovalent linker design tutorial
    This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial
    7 KB (903 words) - 20:08, 18 June 2018
  • DOCK Blaster:Tutorial 2
    ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:23, 12 March 2014
  • DOCK Blaster:Tutorial 5
    ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:23, 12 March 2014
  • DOCK Blaster:Tutorial 6
    ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:24, 12 March 2014
  • Chimera Tutorial (Delta opioid receptor)
    1 KB (175 words) - 16:16, 2 October 2017
  • DOCKovalent lysine inhibitor design tutorial
    This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial
    7 KB (903 words) - 16:52, 11 April 2019
  • Tutorial on running DOCK3.7 with GIST
    Tutorial by Trent Balius (2017/01/30). This tutorial assumes that you have already completed the MD tutorial [[Tutorial on running Molecular Dynamics for GIST grid generation with scripts]].
    18 KB (2,525 words) - 01:31, 16 November 2017
  • DOCKovalent cysteine inhibitor design tutorial
    This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial
    9 KB (1,113 words) - 22:23, 20 March 2023
  • DOCKovalent lysine inihibitor design tutorial
    This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial
    7 KB (905 words) - 22:22, 20 March 2023
  • Tutorial on running DOCK3.7 with blury-GIST
    774 bytes (123 words) - 19:39, 17 November 2017
  • DOCK 3.7 2014/09/25 FXa Tutorial
    The focus of this tutorial is to perform a retrospective enrichment calculations and a test virtual sc == This part of the tutorial uses the release version of DOCK3.7-beta.1.0.1. ==
    9 KB (1,429 words) - 23:37, 26 April 2016
  • DOCK 3.7 2015/04/15 abl1 Tutorial
    ...il 17, 2015. This tutorial is now superseded by[[DOCK 3.7 2018/06/05 abl1 Tutorial]]. See the following tutorial for updated scripts:
    28 KB (4,315 words) - 21:05, 19 October 2023
  • DOCK 3.7 2016/09/16 abl1 Tutorial
    This tutorial uses the DOCK-3.7-beta3.
    476 bytes (77 words) - 23:56, 16 September 2016
  • DOCK 3.7 2018/06/05 abl1 Tutorial
    This tutorial use the 3.7.2 beta version of dock release on April 17, 2015. This part of the tutorial is tailored for shoichet lab use. An outside user of dock might need to de
    27 KB (4,088 words) - 21:04, 19 October 2023
  • DOCK 3.7 2016/09/16 abl1 Tutorial(building)
    ...15 abl1 Tutorial. Former one works well and is very simple and clear. This tutorial mentions some updates in job submissions.
    7 KB (1,019 words) - 00:16, 18 September 2016
  • Tutorial on running Molecular Dynamics for GIST grid generation
    Tutorial written by Trent Balius (Jan. 9, 2017). To use this tutorial you will need the following:
    26 KB (4,023 words) - 00:21, 5 March 2019
  • DOCK 3.7 tutorial based on Webinar 2017/06/28
    7 KB (931 words) - 15:31, 3 October 2017
  • Tutorial on running Molecular Dynamics for GIST grid generation with scripts
    Tutorial written by Trent Balius (Jan. 9, 2017). To use this tutorial you will need the following:
    49 KB (7,168 words) - 00:18, 9 November 2017
  • Tutorial on running Molecular Dynamics for GIST grid generation with scripts 2
    5 KB (793 words) - 16:26, 3 May 2017
  • DOCK 3.7 2016/09/16 Tutorial for Enrichment Calculations (Trent & Jiankun)
    ...abl1 Tutorial]]. Former one works well and is very simple and clear. This tutorial mentions some updates in job submissions.
    7 KB (1,063 words) - 01:59, 19 September 2016

Page text matches

  • ZINC:Tutorials
    * [[ZINC:Tutorial 1]] - Download a property-filtered database subset for virtual screening * [[ZINC:Tutorial 2]] - Download a vendor database subset for virtual screening
    486 bytes (65 words) - 00:46, 5 January 2019
  • DOCK 3.7 with GIST tutorials
    * [[Tutorial on running Molecular Dynamics for GIST grid generation]] * [[Tutorial on running Molecular Dynamics for GIST grid generation with scripts]]
    437 bytes (61 words) - 19:56, 15 November 2017
  • AWS:Cleanup
    * Tutorial 1: [[AWS:Set up account]] * Tutorial 2: [[AWS:Upload files for docking]]
    1 KB (215 words) - 21:29, 14 September 2022
  • Chimera
    *[[Chimera Tutorial (AMPC)]] *[[Chimera Tutorial (Delta opioid receptor)]]
    387 bytes (49 words) - 18:19, 9 January 2017
  • Tutorial 1
    #REDIRECT [[DOCK Blaster:Tutorial 1]]
    37 bytes (4 words) - 20:33, 8 October 2012
  • JupyterNotebook Guide
    * Tutorial Below is the tutorial that I find very useful for getting started
    1 KB (151 words) - 18:06, 10 October 2019
  • DOCK Blaster:Tutorials
    ...cient information, and excessive information. The level of effort for the tutorial is either easy, moderate, or hard. = [[DOCK Blaster:Tutorial 1 | Dock to human thyroid hormone beta-1]] =
    4 KB (523 words) - 20:02, 8 October 2012
  • One page paper
    [[Category:Tutorial]]
    362 bytes (55 words) - 04:24, 22 July 2015
  • DOCK Blaster:Tutorial 1
    '''DOCK Blaster Tutorial 1. Dock to Human Thyroid Hormone Receptor Beta-1 (TR beta)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]].
    2 KB (302 words) - 02:22, 11 January 2019
  • AWS:Upload files for docking
    * Tutorial 1: [[AWS:Set up account]] * Tutorial 2: [[AWS:Upload files for docking]] THIS TUTORIAL
    5 KB (797 words) - 22:10, 11 October 2022
  • How to Relay Emails to Gmail
    This tutorial applies to RHEL 8 based operating systems (CentOS, Rocky Linux) ...stfix/#Error-1_SASL_authentication_failure_No_worthy_mechs_found Reference Tutorial]'''
    2 KB (354 words) - 22:43, 1 September 2022
  • Useful chimera commands
    *[[Chimera Tutorial (AMPC)]] *[[Chimera Tutorial (Delta opioid receptor)]]
    1 KB (180 words) - 10:10, 24 March 2020
  • DOCK 3.7 2016/09/16 abl1 Tutorial
    This tutorial uses the DOCK-3.7-beta3.
    476 bytes (77 words) - 23:56, 16 September 2016
  • DOCK 3.7
    * [[DOCKovalent lysine inhibitor design tutorial]] * [[DOCKovalent cysteine inhibitor design tutorial]]
    6 KB (844 words) - 17:03, 27 July 2021
  • Which genes do what?
    [[Category:Tutorial]]
    1 KB (159 words) - 16:20, 8 July 2015
  • How to protonate a receptor for docking?
    ...nloaded from www.cgl.ucsf.edu, can add hydrogens to receptors. There is a tutorial on our web site at dock.compbio.ucsf.edu that goes through how to prepare a
    719 bytes (124 words) - 17:29, 15 February 2014
  • How to install and configure R Shiny
    This tutorial shows how to install R Shiny on Centos 7.
    1 KB (139 words) - 23:45, 16 July 2018
  • Adding Static Waters to the Protein Structure
    See this tutorial for AMBER minimization:
    931 bytes (119 words) - 19:02, 12 April 2019
  • AWS:Merge and download results
    * Tutorial 1: [[AWS:Set up account]] * Tutorial 2: [[AWS:Upload files for docking]]
    6 KB (897 words) - 21:30, 14 September 2022
  • New it team members
    * Do the infamous tutorial
    926 bytes (144 words) - 19:25, 19 March 2020
  • AWS:Set up account
    * Tutorial 1 AWS:Set up account THIS TUTORIAL * Tutorial 2: [[AWS:Upload files for docking]]
    8 KB (1,333 words) - 20:38, 19 October 2022
  • OCI:Set up account
    * Tutorial 1 OCI:Set up account THIS TUTORIAL * Tutorial 2: [[OCI:Upload files for docking]]
    8 KB (1,318 words) - 18:35, 22 March 2023
  • Drugs
    [[Category:Tutorial]]
    1 KB (220 words) - 03:50, 23 July 2015
  • How to install and configure JupyterHub
    This tutorial shows how to install and configure JupyterHub on Centos 7.
    1 KB (224 words) - 23:51, 16 July 2018
  • Using thin spheres in DOCK3.7
    ...ow small your radius is. You can check your protein preparation using this tutorial: ==Tutorial for using Thin Spheres in DOCK 3.7.1rc1==
    6 KB (852 words) - 12:41, 4 September 2019
  • ECFP4 Best First Clustering
    Follow the tutorial [[Large-scale SMILES Requesting and Fingerprints Converting]] to get the sm
    1 KB (199 words) - 15:51, 19 September 2017
  • Chemical reactions
    [[Category:Tutorial]]
    1 KB (179 words) - 04:21, 1 October 2015
  • DOCK Blaster:Tutorial 8
    ...to Mineralocorticoid receptor''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    6 KB (878 words) - 03:24, 12 March 2014
  • Erice2010:workshop2
    ...d from SIRAS phasing using Buccaneer, and examining the model in Coot. The tutorial will also cover phase improvement using DM and simple refinement using Refm http://www.ysbl.york.ac.uk/~ccp4mg/ccp4mg_help/tutorial/index.html
    4 KB (580 words) - 20:17, 8 October 2012
  • Interacting with Chemaxon dataset
    ...ontend can be used for viewing and modifying the aggregator database. This tutorial demonstrates how to use JCman UI from the local machine.
    1 KB (158 words) - 18:05, 15 February 2014
  • Analyze ligand geometries using the Cambridge Structural Database (CSD)
    ...out single rotatable bonds is one of the most common uses of the CSD. This tutorial illustrates how '''Mogul''', part of the CSD software can be used to rapidl
    1 KB (180 words) - 23:16, 21 May 2019
  • More cool zinc15 tricks
    Here are questions you can ask. Ideally, work these into a tutorial of some kind:
    2 KB (325 words) - 00:11, 1 February 2017
  • AWS:Submit docking job
    * Tutorial 1: [[AWS:Set up account]] * Tutorial 2: [[AWS:Upload files for docking]]
    8 KB (1,398 words) - 22:11, 11 October 2022
  • March2019 protocol
    Here is the tutorial for the setup script for DOCK3
    1 KB (231 words) - 02:11, 6 April 2019
  • DOCK 3.7 2016/09/16 abl1 Tutorial(building)
    ...15 abl1 Tutorial. Former one works well and is very simple and clear. This tutorial mentions some updates in job submissions.
    7 KB (1,019 words) - 00:16, 18 September 2016
  • Visualizing delphi
    Tutorial on visualizing [[Delphi]] and understanding electrostatic scoring in [[DOCK
    1 KB (236 words) - 18:50, 15 February 2014
  • DOCKovalent cysteine inhibitor design tutorial
    This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial
    9 KB (1,113 words) - 22:23, 20 March 2023
  • DOCK 3.7 2016/09/16 Tutorial for Enrichment Calculations (Trent & Jiankun)
    ...abl1 Tutorial]]. Former one works well and is very simple and clear. This tutorial mentions some updates in job submissions.
    7 KB (1,063 words) - 01:59, 19 September 2016
  • DOCK Blaster:Tutorial 4
    ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:23, 12 March 2014
  • DOCK Blaster:Tutorial 2
    ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:23, 12 March 2014
  • DOCK Blaster:Tutorial 5
    ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:23, 12 March 2014
  • DOCK Blaster:Tutorial 6
    ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:24, 12 March 2014
  • DOCK Blaster:Tutorial 7
    ...hihydrofolate Reductase (DHFR)''' A[[DOCK Blaster:Tutorials | DOCK Blaster Tutorial]]. This tutorial will show you how to retrospectively dock a crystallographically observed l
    10 KB (1,582 words) - 03:24, 12 March 2014
  • DOCK 3.7 2014/09/25 FXa Tutorial
    The focus of this tutorial is to perform a retrospective enrichment calculations and a test virtual sc == This part of the tutorial uses the release version of DOCK3.7-beta.1.0.1. ==
    9 KB (1,429 words) - 23:37, 26 April 2016
  • SVN
    ...nbook.red-bean.com/nightly/en/svn.branchmerge.html Chapter 4, Official SVN tutorial] ...ve tutorial, see the [http://svnbook.red-bean.com/nightly/en/ Official SVN tutorial]
    7 KB (1,204 words) - 13:31, 23 April 2014
  • HEI
    ...rgy intermediate forms is described in a [[How to generate an HEI database|tutorial]].
    2 KB (252 words) - 15:22, 11 March 2014
  • Large-scale SMILES requesting
    This tutorial is for requesting a large number of SMILES for docking results from ZINC se
    3 KB (369 words) - 23:01, 18 September 2017
  • Large-scale SMILES Requesting and Fingerprints Converting
    This tutorial is for requesting a large number of SMILES for docking results from ZINC se
    3 KB (375 words) - 01:34, 19 September 2017
  • DOCKovalent linker design tutoral
    This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial
    7 KB (903 words) - 00:21, 6 April 2018
  • DOCKovalent lysine inhibitor design tutorial
    This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial
    7 KB (903 words) - 16:52, 11 April 2019
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