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This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial

This tutorial is for designing linkers for a covalent inhibitor and is supplement the wor ...are in the /mnt/nfs/home/xiaobo/UCSF_scripts/2018-4-3-covlanet_lysine_wiki-tutorial

...you have run this script, you can visualize your spheres by following this tutorial:

This tutorial describes how to use CartBlanche22.docking.org to select chemical space for

...s for the knowns and the clusterheads that were calculated in the previous tutorial: [http://wiki.bkslab.org/index.php/How_to_process_results_from_a_large-scal

Characterizing the β-lactamase binding site Chimera tutorial

Tutorial on how to prepare files for Dock Blaster using Chimera (it uses snapshot 23

...s a [https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/tutorials/vdtut.html tutorial] on the Chimera web pages.

This tutorial will introduce you to the morphology calculation features included For the purposes of this tutorial, we will keep the default options. These

How to run DOCK/LSD in AWS, follow our tutorial, starting with setting up an AWS account. [[AWS:Set up account]]

This tutorial uses the DOCK3.7.1rc1.

Follow the steps on this tutorial https://www.itzgeek.com/how-tos/linux/centos-how-tos/install-apache-tomcat-

file for the ligand (see [[Structure Preparation Tutorial]])

This tutorial shows how to do parallel search of smi files on the cluster. The files and

...techamber to prepare a MOL2 file for the ligand (see Structure Preparation Tutorial) or various other visualization packages. During the docking procedure, lig

Tutorial by Trent Balius (2017/01/30). This tutorial assumes that you have already completed the MD tutorial [[Tutorial on running Molecular Dynamics for GIST grid generation with scripts]].

...tion systems, such as kerberos, are fine, but are beyond the scope of this tutorial.

Use the tutorial above instead. Or use this link to run blastermaster manually:

...w now, which will minimize it to your notifications bar (on windows). This tutorial shows how to set up a Bitvise client, but these steps can also be applied t

If you followed the tutorial above, you may have noticed that the create-aws-batch-env.bash script was p