User contributions for Oliv Eidam

22:5422:54, 6 May 2013 diff hist +2,893‎ N Filter.py: ‎ Created page with "=Filter.py: search a substructure in DOCK poses and calculate atom distances= Sometimes it is interesting to search for a substructure in your DOCK output poses and calculate..."
22:0322:03, 6 May 2013 diff hist −118‎ Calculate DOCK6 RMSD ‎No edit summary
21:4821:48, 6 May 2013 diff hist +849‎ Screen3d ‎No edit summary
21:4421:44, 6 May 2013 diff hist +1‎ Omega.parm ‎No edit summary
21:4321:43, 6 May 2013 diff hist +20‎ Omega.parm ‎No edit summary
21:4121:41, 6 May 2013 diff hist +1,019‎ Omega.parm ‎No edit summary
21:3321:33, 6 May 2013 diff hist 0‎ N File:Omega1.png ‎No edit summary current
21:3221:32, 6 May 2013 diff hist 0‎ N File:Dock4 noEstat.png ‎No edit summary current
21:2321:23, 6 May 2013 diff hist +4‎ Plop ‎No edit summary
21:1821:18, 6 May 2013 diff hist +886‎ Plop ‎No edit summary
21:0821:08, 6 May 2013 diff hist +249‎ Plop ‎No edit summary
21:0821:08, 6 May 2013 diff hist 0‎ N File:Map.png ‎No edit summary current
21:0721:07, 6 May 2013 diff hist 0‎ N File:Plop960.png ‎No edit summary current
21:0721:07, 6 May 2013 diff hist 0‎ N File:Xtal.png ‎No edit summary current

23:5523:55, 30 April 2013 diff hist +1‎ Phenix ‎No edit summary
23:5423:54, 30 April 2013 diff hist 0‎ N File:Sa omit map2.png ‎No edit summary current
23:4423:44, 30 April 2013 diff hist +13‎ Phenix ‎No edit summary
23:3823:38, 30 April 2013 diff hist +1,201‎ Phenix ‎No edit summary
23:3023:30, 30 April 2013 diff hist 0‎ N File:Sa omit map.png ‎No edit summary current
23:1823:18, 30 April 2013 diff hist +1,019‎ Phenix ‎No edit summary
20:4020:40, 30 April 2013 diff hist +487‎ Phenix ‎No edit summary
18:2818:28, 30 April 2013 diff hist 0‎ N File:Pdb sf download.jpg ‎No edit summary current
18:2118:21, 30 April 2013 diff hist +577‎ N Phenix ‎ Created page with "==Calculate electron densities using Phenix== Here are a couple of useful phenix commands to calculate electron densities. In docking, it is often useful to have a look at el..."

22:5222:52, 29 April 2013 diff hist +19‎ Calculate DOCK6 RMSD ‎No edit summary
22:5022:50, 29 April 2013 diff hist +3,005‎ N Calculate DOCK6 RMSD ‎ Created page with "==Calculate ligand RMSDs using DOCK6== Calculating ligand RMSDs is a tricky thing, but DOCK6 does this quite well. All you need is two ligands (with the same number of atoms..."
22:0822:08, 29 April 2013 diff hist +4‎ Tools for protein and ligand analysis ‎No edit summary
22:0722:07, 29 April 2013 diff hist +2,855‎ N Omega.parm ‎ Created page with "==Changing settings for OMEGA (OpenEye)== You may be interested to change the default settings for OMEGA (defined in omega.py) when generating conformations for docking. Maby..."
22:0422:04, 29 April 2013 diff hist +145‎ Omega.py ‎No edit summary
22:0022:00, 29 April 2013 diff hist −1,654‎ Omega.py ‎No edit summary
21:4921:49, 29 April 2013 diff hist +495‎ Screen3d ‎No edit summary
20:3820:38, 29 April 2013 diff hist +1,703‎ N Screen3d ‎ Created page with "==Sceen3d: Align ligands in 3D== This tool is useful if you want to align (superpose) conformations of a ligand (for example generated by OMEGA). Maybe you are interested to ..."

23:4023:40, 26 April 2013 diff hist +68‎ Omega.py ‎No edit summary
22:4222:42, 26 April 2013 diff hist +4,296‎ N Omega.py ‎ Created page with "==Changing settings for Omega (OpenEye)== You may be interested to change the default settings for Omega (defined in omega.py) when generating conformations for docking. Maby..."
19:0819:08, 26 April 2013 diff hist +156‎ Plop ‎No edit summary
19:0319:03, 26 April 2013 diff hist +12‎ Plop ‎No edit summary
19:0319:03, 26 April 2013 diff hist +6‎ Plop ‎No edit summary

21:3021:30, 25 April 2013 diff hist 0‎ Plop ‎No edit summary
21:2621:26, 25 April 2013 diff hist 0‎ Plop ‎No edit summary
21:2421:24, 25 April 2013 diff hist −40‎ Plop ‎No edit summary
21:2321:23, 25 April 2013 diff hist +1‎ Plop ‎No edit summary
21:2321:23, 25 April 2013 diff hist +322‎ Plop ‎No edit summary
21:1521:15, 25 April 2013 diff hist −1‎ Plop ‎No edit summary
21:1421:14, 25 April 2013 diff hist +276‎ Plop ‎No edit summary
21:0821:08, 25 April 2013 diff hist +80‎ Plop ‎No edit summary
21:0621:06, 25 April 2013 diff hist +2,908‎ N Plop ‎ Created page with "==Energy minimization using Plop== This page describes simple protocols for receptor/active site and ligand minimization using Plop.<br> Check also the Plop manual on the Jaco..."

Navigation menu