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Upgrading software can be a big deal. Here are our strategies to make it less painful. * Software, stored centrally in /nfs/software/

All of our free software and databases come with NO guarantee. We accept no responsibility for errors arising from the use of our databases, software, and websites.

...r running software in containers, and has nothing to do with our UCSF DOCK software. We used the name first, but they are godzilla compared to our bambi.

If you have arrived here, you have identified as not being a member of our lab. Many of our services and databases are available on the web.

...min]]s who can discuss options with you and help you get set up to run our software there. Back to [[Our cluster]].

...min]]s who can discuss options with you and help you get set up to run our software there. Back to [[Our cluster]].

We allow you to download and run software on your own servers. It is more work than running on our servers, but it gives you more flexibility, and more capacity.

...to run most things on our servers at some level. You can also download our software and databases to [[Run on your servers]]

We use Drupal for our docking.org blog. [[Category:Software]]

...ting system level, a week to install middleware, and a week to install our software. Times will be longer if it is your first time. Once running, expect 1 da ...ting system to describe all software components that are not particular to our field. Thus for the purposes of this discussion, python and a queuing syste

We develop on and recommend Centos. Our software should work on [[Category:Software]]

== Software for local installation == == Software for use on our website ==

...t to group members, our collaborators and anyone else who wishes to access our cluster via ssh. If you are not a member of the lab, please see [[Welcome w Please see our [[:Category:Cluster | cluster]] page.

= Step 1. Download DOCK.3.8 and other software = ...s a lot of software in it, which can make it a bit expensive to throw in a software image.

...torials]] - step by step instructions of how to use [[:Category:Software | software ]], [[:Category:Databases | databases]], or [[:Category:Websites | websites * [[:Category:Reviews | Reviews ]] - and commentary on software, databases, papers, meetings, websites or other topics of interest.

= Our software = ...r's account. It is easy to generalize this to a global location, e.g. /nfs/software . You can request a license and a copy (free to academics, a bargain for fo

[[Category:Our Software]]

...broken in a docking hit list. Of course, this is simply a problem in our software. You can take these fellows on by telling us about them. We'll send a hit ...a seething underworld of problems in molecular docking in general and our software in particular. A kind of "10 most wanted list", if you will. More will be

These are our notes for installing Phenix scp it to fawlty:/nfs/software/phenix/

Here is how to build a core research lab using our tools. * 2. Get our tools and install core packages