Difference between revisions of "Manage Lab Websites"

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Line 279: Line 279:
  
 
=== For websites running on Supervisord ===
 
=== For websites running on Supervisord ===
==== Restart application ====
+
==== Restart applications ====
 
* Become root on server the website runs on gimel
 
* Become root on server the website runs on gimel
  $ supervisorctl status
+
  $ supervisorctl status //to list all of current running apps
 
  $ supervisorctl restart <name>
 
  $ supervisorctl restart <name>
 
   i.e  
 
   i.e  
 
  $ supervisorctl restart bks-lab
 
  $ supervisorctl restart bks-lab
$ supervisorctl restart tools18
 
  
 +
<b>TLDR</b> is running on gimel2 and managed by supervisord
 +
$ supervisorctl restart tldr
 
==== Start Supervisord ====
 
==== Start Supervisord ====
 
  $ supervisord
 
  $ supervisord
  
 
[[Category : Sysadmin]] [[Category : Khanh]]
 
[[Category : Sysadmin]] [[Category : Khanh]]

Revision as of 22:36, 27 May 2022

List of Websites

Last updated on 05/27/2022

Website Machine:Port Run on Hosted in (httpd/conf.d) Working
Amis: https://amis.docking.org/ Files2 (169.230.75.3) Yes
Arthor: https://arthor.docking.org/ nun, samekh, n-9-22; Port 8000 Screen Files2 (169.230.75.3) Yes
BKSLab: http://www.bkslab.org/ gimel:5002 Supervisord Vav (169.230.26.43) Yes
Blaster: https://blaster.docking.org/ Vav (169.230.26.43, can not be moved to files2) Yes
Cartblanche: https://cartblanche.docking.org/ gimel:5066-5067 Files2 (169.230.75.3) Yes
Covalent: http://covalent.docking.org/ Vav (169.230.26.43, can not be moved to files2) Yes
DSF: https://dsf.docking.org/ Vav (169.230.26.43) No (wrong website)
Duc: https://duc.docking.org/ Vav (169.230.26.43) No
Dud: https://dud.docking.org/ Vav (169.230.26.43, can not be moved to files2) Yes
Dude18: http://dude18.docking.org/ Vav (169.230.26.43) No
Dude: http://dude.docking.org/ Vav (169.230.26.43, can not be moved to files2) Yes
Dudez: http://dudez.docking.org/ Files2 (169.230.75.3) Yes
Excipients: http://excipients.docking.org/ gimel:8093 Supervisord Vav (169.230.26.43) Yes
Gitlab: https://gitlab.docking.org/ Files2 (169.230.75.3) No
HG: https://hg.docking.org/ Files2 (169.230.75.3) No
IrwinLab: http://irwinlab.compbio.ucsf.edu/ gimel:5004 Supervisord Vav (169.230.26.43) Yes
Khanh: http://khanh.docking.org/ Vav (169.230.26.43) Yes
Metabolite: http://metabolite.docking.org/ Tau (169.230.26.43, can not be moved to files2) showing wrong website
Deepchemworkshop: http://deepchemworkshop.docking.org/ Vav (169.230.26.43) Yes
Prices: http://prices.docking.org/ gimel:5022 Tau (169.230.26.43) No
Psicquic: http://psicquic.docking.org/ Tau (169.230.26.43) Yes (broken???)
Reactor: http://reactor.docking.org/ Vav (169.230.26.43) Yes
Transporters: http://transporters.ucsf.bkslab.org/ Vav (169.230.26.43) Yes
Sea16: http://sea16.docking.org/ gimel:8086 Files2 (169.230.75.3) Yes
SEC: http://sec.docking.org/ Vav (169.230.26.43) Yes
Smallworld Public: http://sw.docking.org/ abacus:5020 screen Files2 (169.230.75.3) Yes
Smallworld Private: http://swp.docking.org/ abacus:8080 screen Files2 (169.230.75.3) Yes
Smallworld Super Private: http://swc.docking.org/ abacus:5099 screen Files2 (169.230.75.3) Yes
Stats: http://stats.docking.org/ Vav (169.230.26.43, can not be moved to files2) No
Symp: http://symp.docking.org/ Vav (169.230.26.43) No
TLDR http://tldr.docking.org/ gimel2:5000 Supervisord Files2 (169.230.26.43) Yes
Tool-Selector: http://tool-selector.ucsf.bkslab.org/ Vav (169.230.26.43) Yes
Transportal: http://transportal.docking.org/ n-9-23 : port 8123 screen Vav (169.230.26.43) Yes
Upload: http://upload.docking.org/ Tau (169.230.26.43) Yes
Zinc12: http://zinc12.docking.org/ Tau (169.230.26.43, can not be moved to files2) Yes
Zinc15: http://zinc.docking.org/ Files2 (169.230.75.3) Yes
Zinc20: http://zinc20.docking.org/ Files2 (169.230.75.3) Yes

Restart Instructions after UPS

ZINC

ZINC15

login to n-9-23 and become root

$ screen -r zinc-15
$ cd /mnt/nfs/soft/www/apps/zinc15/envs/
$ source production/bin/activate.csh
$ cd /nfs/soft/www/apps/zinc15/envs/production/bin/
$ sh ./zincserver.restart-backend.sh

ZINC20 =

log into n-9-22 and become root

$ screen -r zinc20prod
$ bash
$ source source /mnt/nfs/home/devtest/anaconda3/bin/activate 
$ conda activate /nfs/soft/www/apps/zinc21/envs/development
$ cd /nfs/soft/www/apps/zinc21/envs/development/bin/
$ sh ./zincserver.restart-backend.sh

For websites running on Screen

SEA

SEA is running on a screen on gimel

Become www on gimel

$ cd /nfs/soft/www/apps/seadev/
On bash shell
$ source tools/anaconda2/bin/activate sea16
$ cd work/seaware/seaware-academic
$ make SEAserver-stop-devel
$ make all
$ make SEAserver-start-devel
Ctrl A+D to detach screen

Transportal

Login n-9-23 and become root

$ screen -ls
$ screen -r transportal
$ cd  /mnt/nfs/soft/www/apps/transportal/
$ source envs/production-3.6/bin/activate.csh
$ cd /nfs/soft/www/home/apps/transportal/src/transportal_2022/transportal
$ python manage.py runserver 0.0.0.0:8123
Ctrl A+D to detach screen

For websites running on Supervisord

Restart applications

  • Become root on server the website runs on gimel
$ supervisorctl status //to list all of current running apps
$ supervisorctl restart <name>
  i.e 
$ supervisorctl restart bks-lab

TLDR is running on gimel2 and managed by supervisord

$ supervisorctl restart tldr

Start Supervisord

$ supervisord