Difference between revisions of "Manage Lab Websites"

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Line 244: Line 244:
  $ sh ./zincserver.restart-backend.sh
  $ sh ./zincserver.restart-backend.sh
==== ZINC20 =====
==== ZINC20 ====
log into n-9-22 and become root
log into n-9-22 and become root
  $ screen -r zinc20prod
  $ screen -r zinc20prod

Revision as of 22:36, 27 May 2022

List of Websites

Last updated on 05/27/2022

Website Machine:Port Run on Hosted in (httpd/conf.d) Working
Amis: https://amis.docking.org/ Files2 ( Yes
Arthor: https://arthor.docking.org/ nun, samekh, n-9-22; Port 8000 Screen Files2 ( Yes
BKSLab: http://www.bkslab.org/ gimel:5002 Supervisord Vav ( Yes
Blaster: https://blaster.docking.org/ Vav (, can not be moved to files2) Yes
Cartblanche: https://cartblanche.docking.org/ gimel:5066-5067 Files2 ( Yes
Covalent: http://covalent.docking.org/ Vav (, can not be moved to files2) Yes
DSF: https://dsf.docking.org/ Vav ( No (wrong website)
Duc: https://duc.docking.org/ Vav ( No
Dud: https://dud.docking.org/ Vav (, can not be moved to files2) Yes
Dude18: http://dude18.docking.org/ Vav ( No
Dude: http://dude.docking.org/ Vav (, can not be moved to files2) Yes
Dudez: http://dudez.docking.org/ Files2 ( Yes
Excipients: http://excipients.docking.org/ gimel:8093 Supervisord Vav ( Yes
Gitlab: https://gitlab.docking.org/ Files2 ( No
HG: https://hg.docking.org/ Files2 ( No
IrwinLab: http://irwinlab.compbio.ucsf.edu/ gimel:5004 Supervisord Vav ( Yes
Khanh: http://khanh.docking.org/ Vav ( Yes
Metabolite: http://metabolite.docking.org/ Tau (, can not be moved to files2) showing wrong website
Deepchemworkshop: http://deepchemworkshop.docking.org/ Vav ( Yes
Prices: http://prices.docking.org/ gimel:5022 Tau ( No
Psicquic: http://psicquic.docking.org/ Tau ( Yes (broken???)
Reactor: http://reactor.docking.org/ Vav ( Yes
Transporters: http://transporters.ucsf.bkslab.org/ Vav ( Yes
Sea16: http://sea16.docking.org/ gimel:8086 Files2 ( Yes
SEC: http://sec.docking.org/ Vav ( Yes
Smallworld Public: http://sw.docking.org/ abacus:5020 screen Files2 ( Yes
Smallworld Private: http://swp.docking.org/ abacus:8080 screen Files2 ( Yes
Smallworld Super Private: http://swc.docking.org/ abacus:5099 screen Files2 ( Yes
Stats: http://stats.docking.org/ Vav (, can not be moved to files2) No
Symp: http://symp.docking.org/ Vav ( No
TLDR http://tldr.docking.org/ gimel2:5000 Supervisord Files2 ( Yes
Tool-Selector: http://tool-selector.ucsf.bkslab.org/ Vav ( Yes
Transportal: http://transportal.docking.org/ n-9-23 : port 8123 screen Vav ( Yes
Upload: http://upload.docking.org/ Tau ( Yes
Zinc12: http://zinc12.docking.org/ Tau (, can not be moved to files2) Yes
Zinc15: http://zinc.docking.org/ Files2 ( Yes
Zinc20: http://zinc20.docking.org/ Files2 ( Yes

Restart Instructions after UPS



login to n-9-23 and become root

$ screen -r zinc-15
$ cd /mnt/nfs/soft/www/apps/zinc15/envs/
$ source production/bin/activate.csh
$ cd /nfs/soft/www/apps/zinc15/envs/production/bin/
$ sh ./zincserver.restart-backend.sh


log into n-9-22 and become root

$ screen -r zinc20prod
$ bash
$ source source /mnt/nfs/home/devtest/anaconda3/bin/activate 
$ conda activate /nfs/soft/www/apps/zinc21/envs/development
$ cd /nfs/soft/www/apps/zinc21/envs/development/bin/
$ sh ./zincserver.restart-backend.sh

For websites running on Screen


SEA is running on a screen on gimel

Become www on gimel

$ cd /nfs/soft/www/apps/seadev/
On bash shell
$ source tools/anaconda2/bin/activate sea16
$ cd work/seaware/seaware-academic
$ make SEAserver-stop-devel
$ make all
$ make SEAserver-start-devel
Ctrl A+D to detach screen


Login n-9-23 and become root

$ screen -ls
$ screen -r transportal
$ cd  /mnt/nfs/soft/www/apps/transportal/
$ source envs/production-3.6/bin/activate.csh
$ cd /nfs/soft/www/home/apps/transportal/src/transportal_2022/transportal
$ python manage.py runserver
Ctrl A+D to detach screen

For websites running on Supervisord

Restart applications

  • Become root on server the website runs on gimel
$ supervisorctl status //to list all of current running apps
$ supervisorctl restart <name>
$ supervisorctl restart bks-lab

TLDR is running on gimel2 and managed by supervisord

$ supervisorctl restart tldr

Start Supervisord

$ supervisord