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== List of Websites == | == List of Websites == | ||
Last updated on 01/05/2021 | |||
{| class="wikitable" | {| class="wikitable" | ||
| | !Website | ||
| | !Machine:Port | ||
| | !Run on | ||
!Hosted in (httpd/conf.d) | |||
!Working | |||
|- | |||
|Amis: https://amis.docking.org/ | |||
| | |||
| | |||
|Files2 (169.230.75.3) | |||
|Yes | |||
|- | |||
|Arthor: https://arthor.docking.org/ | |||
|nun, samekh, n-9-22; Port 8000 | |||
|Screen | |||
|Files2 (169.230.75.3) | |||
|Yes | |||
|- | |- | ||
|BKSLab | |BKSLab: http://www.bkslab.org/ | ||
|gimel | |gimel:5002 | ||
|Supervisord | |Supervisord | ||
|Tau (169.230.26.43) | |||
|Yes | |||
|- | |||
|Blaster: https://blaster.docking.org/ | |||
| | |||
| | |||
|Tau (169.230.26.43, can not be moved to files2) | |||
|Yes | |||
|- | |||
|Cartblanche: https://cartblanche.docking.org/ | |||
|gimel:5066-5067 | |||
| | |||
|Files2 (169.230.75.3) | |||
|Yes | |||
|- | |||
|Covalent: http://covalent.docking.org/ | |||
| | |||
| | |||
|Tau (169.230.26.43, can not be moved to files2) | |||
|Yes | |||
|- | |||
|DSF: https://dsf.docking.org/ | |||
| | |||
| | |||
|Tau (169.230.26.43) | |||
|No (wrong website) | |||
|- | |||
|Duc: https://duc.docking.org/ | |||
| | |||
| | |||
|Tau (169.230.26.43) | |||
|No | |||
|- | |||
|Dud: https://dud.docking.org/ | |||
| | |||
| | |||
|Tau (169.230.26.43, can not be moved to files2) | |||
|Yes | |||
|- | |||
|Dude18: http://dude18.docking.org/ | |||
| | |||
| | |||
|Tau (169.230.26.43) | |||
|No | |||
|- | |- | ||
|Excipients | |Dude: http://dude.docking.org/ | ||
| | | | ||
| | |||
|Tau (169.230.26.43, can not be moved to files2) | |||
|Yes | |||
|- | |||
|Dudez: http://dudez.docking.org/ | |||
| | |||
| | |||
|Files2 (169.230.75.3) | |||
|Yes | |||
|- | |||
|Excipients: http://excipients.docking.org/ | |||
|gimel:8093 | |||
| | |||
|Tau (169.230.26.43) | |||
|Yes | |||
|- | |||
|Gitlab: https://gitlab.docking.org/ | |||
| | |||
| | |||
|Files2 (169.230.75.3) | |||
|No | |||
|- | |||
|HG: https://hg.docking.org/ | |||
| | |||
| | |||
|Files2 (169.230.75.3) | |||
|No | |||
|- | |||
|IrwinLab: http://irwinlab.compbio.ucsf.edu/ | |||
|gimel:5004 | |||
|Supervisord | |Supervisord | ||
|Tau (169.230.26.43) | |||
|Yes | |||
|- | |||
|Khanh: http://khanh.docking.org/ | |||
| | |||
| | |||
|Tau (169.230.26.43) | |||
|Yes | |||
|- | |- | ||
| | |Metabolite: http://metabolite.docking.org/ | ||
| | | | ||
| | |||
|Tau (169.230.26.43, can not be moved to files2) | |||
|showing wrong website | |||
|- | |||
|Deepchemworkshop: http://deepchemworkshop.docking.org/ | |||
| | |||
| | |||
|Tau (169.230.26.43) | |||
|Yes | |||
|- | |||
|Prices: http://prices.docking.org/ | |||
|gimel:5022 | |||
| | |||
|Tau (169.230.26.43) | |||
|No | |||
|- | |||
|Psicquic: http://psicquic.docking.org/ | |||
| | |||
| | |||
|Tau (169.230.26.43) | |||
|Yes (broken???) | |||
|- | |||
|Reactor: http://reactor.docking.org/ | |||
| | |||
| | |||
|Tau (169.230.26.43) | |||
|Yes | |||
|- | |||
|Transporters: http://transporters.ucsf.bkslab.org/ | |||
| | |||
| | |||
|Tau (169.230.26.43) | |||
|Yes | |||
|- | |||
|Sea16: http://sea16.docking.org/ | |||
|gimel:8086 | |||
| | |||
|Files2 (169.230.75.3) | |||
|Yes | |||
|- | |||
|SEC: http://sec.docking.org/ | |||
| | |||
| | |||
|Tau (169.230.26.43) | |||
|Yes | |||
|- | |||
|Smallworld Public: http://sw.docking.org/ | |||
|abacus:5020 | |||
|screen | |||
|Files2 (169.230.75.3) | |||
|Yes | |||
|- | |||
|Smallworld Private: http://swp.docking.org/ | |||
|abacus:8080 | |||
|screen | |screen | ||
|Files2 (169.230.75.3) | |||
|Yes | |||
|- | |- | ||
| | |Smallworld Super Private: http://swc.docking.org/ | ||
| | |abacus:5099 | ||
|screen | |screen | ||
|Files2 (169.230.75.3) | |||
|Yes | |||
|- | |||
|Stats: http://stats.docking.org/ | |||
| | |||
| | |||
|Tau (169.230.26.43, can not be moved to files2) | |||
|No | |||
|- | |||
|Symp: http://symp.docking.org/ | |||
| | |||
| | |||
|Tau (169.230.26.43) | |||
|No | |||
|- | |||
|TLDR http://tldr.docking.org/ | |||
|gimel:5011 | |||
|Supervisord | |||
|Tau (169.230.26.43) | |||
|Yes | |||
|- | |||
|Tool-Selector: http://tool-selector.ucsf.bkslab.org/ | |||
| | |||
| | |||
|Tau (169.230.26.43) | |||
|Yes | |||
|- | |||
|Transportal: http://transportal.docking.org/ | |||
|n-9-22 : port 8123 | |||
|screen | |||
|Tau (169.230.26.43) | |||
|Yes | |||
|- | |||
|Upload: http://upload.docking.org/ | |||
| | |||
| | |||
|Tau (169.230.26.43) | |||
|Yes | |||
|- | |||
|Zinc12: http://zinc12.docking.org/ | |||
| | |||
| | |||
|Tau (169.230.26.43, can not be moved to files2) | |||
|Yes | |||
|- | |||
|- | |||
|Zinc15: http://zinc.docking.org/ | |||
| | |||
| | |||
|Files2 (169.230.75.3) | |||
|Yes | |||
|- | |||
|Zinc20: http://zinc20.docking.org/ | |||
| | |||
| | |||
|Files2 (169.230.75.3) | |||
|Yes | |||
|- | |- | ||
|} | |} | ||
== Restart Instructions == | == Restart Instructions after UPS== | ||
=== For websites running on Screen === | |||
* Become khtang on gimel | |||
$ screen -ls | |||
21546.SEA (Detached) | |||
23528.transportal (Detached) | |||
22877.conference (Detached) | |||
16132.upload (Detached) | |||
24786.oeb_lib_building (Detached) | |||
4796.ShopAppMol (Detached) | |||
19162.FASTROCS-server (Detached) | |||
$ screen -r <screen_id> | |||
==== SEA ==== | |||
Become www on gimel2 | |||
$ cd /nfs/soft/www/apps/seadev/ | |||
On bash shell | |||
$ source tools/anaconda2/bin/activate sea16 | |||
$ cd work/seaware/seaware-academic | |||
$ make SEAserver-stop-devel | |||
$ make all | |||
$ make SEAserver-start-devel | |||
==== Transportal ==== | |||
$ cd /mnt/nfs/soft/www/apps/transportal/src/transportal | |||
$ source venv/bin/activate.csh | |||
$ python manage.py runserver 0.0.0.0:8123 | |||
=== For websites running on Supervisord === | |||
* Become root on server the website runs on | |||
$ supervisorctl status | |||
$ supervisorctl restart <name> | |||
i.e | |||
$ supervisorctl restart bks-lab | |||
$ supervisorctl restart tools18 | |||
[[Category : Khanh]] |
Revision as of 20:51, 5 January 2021
List of Websites
Last updated on 01/05/2021
Website | Machine:Port | Run on | Hosted in (httpd/conf.d) | Working |
---|---|---|---|---|
Amis: https://amis.docking.org/ | Files2 (169.230.75.3) | Yes | ||
Arthor: https://arthor.docking.org/ | nun, samekh, n-9-22; Port 8000 | Screen | Files2 (169.230.75.3) | Yes |
BKSLab: http://www.bkslab.org/ | gimel:5002 | Supervisord | Tau (169.230.26.43) | Yes |
Blaster: https://blaster.docking.org/ | Tau (169.230.26.43, can not be moved to files2) | Yes | ||
Cartblanche: https://cartblanche.docking.org/ | gimel:5066-5067 | Files2 (169.230.75.3) | Yes | |
Covalent: http://covalent.docking.org/ | Tau (169.230.26.43, can not be moved to files2) | Yes | ||
DSF: https://dsf.docking.org/ | Tau (169.230.26.43) | No (wrong website) | ||
Duc: https://duc.docking.org/ | Tau (169.230.26.43) | No | ||
Dud: https://dud.docking.org/ | Tau (169.230.26.43, can not be moved to files2) | Yes | ||
Dude18: http://dude18.docking.org/ | Tau (169.230.26.43) | No | ||
Dude: http://dude.docking.org/ | Tau (169.230.26.43, can not be moved to files2) | Yes | ||
Dudez: http://dudez.docking.org/ | Files2 (169.230.75.3) | Yes | ||
Excipients: http://excipients.docking.org/ | gimel:8093 | Tau (169.230.26.43) | Yes | |
Gitlab: https://gitlab.docking.org/ | Files2 (169.230.75.3) | No | ||
HG: https://hg.docking.org/ | Files2 (169.230.75.3) | No | ||
IrwinLab: http://irwinlab.compbio.ucsf.edu/ | gimel:5004 | Supervisord | Tau (169.230.26.43) | Yes |
Khanh: http://khanh.docking.org/ | Tau (169.230.26.43) | Yes | ||
Metabolite: http://metabolite.docking.org/ | Tau (169.230.26.43, can not be moved to files2) | showing wrong website | ||
Deepchemworkshop: http://deepchemworkshop.docking.org/ | Tau (169.230.26.43) | Yes | ||
Prices: http://prices.docking.org/ | gimel:5022 | Tau (169.230.26.43) | No | |
Psicquic: http://psicquic.docking.org/ | Tau (169.230.26.43) | Yes (broken???) | ||
Reactor: http://reactor.docking.org/ | Tau (169.230.26.43) | Yes | ||
Transporters: http://transporters.ucsf.bkslab.org/ | Tau (169.230.26.43) | Yes | ||
Sea16: http://sea16.docking.org/ | gimel:8086 | Files2 (169.230.75.3) | Yes | |
SEC: http://sec.docking.org/ | Tau (169.230.26.43) | Yes | ||
Smallworld Public: http://sw.docking.org/ | abacus:5020 | screen | Files2 (169.230.75.3) | Yes |
Smallworld Private: http://swp.docking.org/ | abacus:8080 | screen | Files2 (169.230.75.3) | Yes |
Smallworld Super Private: http://swc.docking.org/ | abacus:5099 | screen | Files2 (169.230.75.3) | Yes |
Stats: http://stats.docking.org/ | Tau (169.230.26.43, can not be moved to files2) | No | ||
Symp: http://symp.docking.org/ | Tau (169.230.26.43) | No | ||
TLDR http://tldr.docking.org/ | gimel:5011 | Supervisord | Tau (169.230.26.43) | Yes |
Tool-Selector: http://tool-selector.ucsf.bkslab.org/ | Tau (169.230.26.43) | Yes | ||
Transportal: http://transportal.docking.org/ | n-9-22 : port 8123 | screen | Tau (169.230.26.43) | Yes |
Upload: http://upload.docking.org/ | Tau (169.230.26.43) | Yes | ||
Zinc12: http://zinc12.docking.org/ | Tau (169.230.26.43, can not be moved to files2) | Yes | ||
Zinc15: http://zinc.docking.org/ | Files2 (169.230.75.3) | Yes | ||
Zinc20: http://zinc20.docking.org/ | Files2 (169.230.75.3) | Yes |
Restart Instructions after UPS
For websites running on Screen
- Become khtang on gimel
$ screen -ls
21546.SEA (Detached) 23528.transportal (Detached) 22877.conference (Detached) 16132.upload (Detached) 24786.oeb_lib_building (Detached) 4796.ShopAppMol (Detached) 19162.FASTROCS-server (Detached)
$ screen -r <screen_id>
SEA
Become www on gimel2
$ cd /nfs/soft/www/apps/seadev/ On bash shell $ source tools/anaconda2/bin/activate sea16 $ cd work/seaware/seaware-academic $ make SEAserver-stop-devel $ make all $ make SEAserver-start-devel
Transportal
$ cd /mnt/nfs/soft/www/apps/transportal/src/transportal $ source venv/bin/activate.csh $ python manage.py runserver 0.0.0.0:8123
For websites running on Supervisord
- Become root on server the website runs on
$ supervisorctl status $ supervisorctl restart <name> i.e $ supervisorctl restart bks-lab $ supervisorctl restart tools18