MUD - Michael's Utilities for Docking

What's in MUD?

• Tools to start, check, and restart dock jobs
• Tools to combine, enrich, plot, and view docking results

Setting up MUD

• For convenience, point a shell variable to the base mud directory to save typing

set mud=~mysinger/code/mud/trunk

• If you use MUD a lot, you can add this to your ~/.login
• Then simply run commands like this:

$mud/submit.csh
$mud/check.py -h

• Use -h or --help to get full help information for the .py (python) scripts
• The .csh scripts will automatically print usage information if mis-used

Job Control

• Submit a job to the cluser

Similar to startdockbksX, but records job submission

$mud/submit.csh

• Check job status

$mud/check.py

• Restart failed jobs

$mud/restart.py