How to install DOCK 3.8: Difference between revisions

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dock37_matchcap  : DOCK 3.7 executable that more strictly caps the number of matches DOCK generates - slightly faster!
dock37_matchcap  : DOCK 3.7 executable that more strictly caps the number of matches DOCK generates - slightly faster!
dock38_matchcap  : Same as above, but for 3.8
dock38_matchcap  : Same as above, but for 3.8
dock38_nogist    : DOCK 3.8 sans error messages that sometimes occur when using recently built libraries</nowiki>
dock38_nogist    : DOCK 3.8 sans error messages that sometimes occur when using recently built ligand libraries</nowiki>




[[Category:DOCK 3.8]]
[[Category:DOCK 3.8]]
[[Category:Developers]]
[[Category:Developers]]

Revision as of 04:44, 3 March 2023

Compiling from source

See this page: How_to_compile_DOCK

If you are a BKS or Wynton cluster member, you should follow the instructions for compiling via pgf. The DOCK 3.8 source can be found on github:

git clone https://github.com/docking-org/dock3.git

For any others without access to our clusters or a PGF license, follow the gfortran instructions.

Prebuilt Executable

DOCK is constantly being modified & fine-tuned, sometimes there may be a special version of DOCK floating around you want to use, or perhaps you have a special version of your own you'd like to share. We collect all custom DOCK executables on the BKS cluster at this location (which is world-writable):

/nfs/soft/dock/versions/dock38/executables

Here is a brief description of the various executables here at the time of writing:

dock37_vanilla   : standard DOCK 3.7 executable
dock38_vanilla   : standard DOCK 3.8 executable 
dock37_matchcap  : DOCK 3.7 executable that more strictly caps the number of matches DOCK generates - slightly faster!
dock38_matchcap  : Same as above, but for 3.8
dock38_nogist    : DOCK 3.8 sans error messages that sometimes occur when using recently built ligand libraries