DOCK Blaster:Tutorial 3

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This is one of the DOCK Blaster:Tutorials.

DOCK Blaster:Tutorial 3

DOCK to target X, for which only an apo structure is available. Describes both modeling a ligand in, and using protein residues in the binding site to indicate the binding site. An additional difficulty is the lack of diagnostics because of no ligand.

Conceptual Overview

  • question 1.
  • question 2.

From Theory to Action

Acquire Sample Data

Launch Preliminary Calculation

Examining the Results

Docking a Database

Follow up, variations

Possible problems and alterative strategies