DOCK Blaster:Prepare Input

This is the guide of how to prepare input for DOCK Blaster.

Quick Overview

• 1. Specify a target (PDB format).
• 2. Identify the binding site with a ligand or residues that form the site.
• 3. Select a database to dock.
• 4. Supply any positive controls (actives) you may have.
• 5. Supply any negative controls (experimental decoys) you may have.
• 6. Agree to the terms and click "I agree, DOCK!"

Sample Data

Sample data are available

• DUD
• Gold test set
• other test sets
• you can also generate your own sample decoy data

Credits

See also:

• DOCK Blaster:Prepare Receptor - detailed information about the receptor site specification
• DOCK Blaster:Prepare Ligand - detailed information about how to specify the binding site
• DOCK Blaster:Prepare Cofactor - detailed information of how to specifiy a co factor
• DOCK Blaster:Other input options - expert options.
• DOCK Blaster:Input Troubleshooting

and the DOCK Blaster main page DOCK Blaster.

THC

Each successful run of DOCK Blaster creates output in the Top Hits Collection (THC)