DOCK Blaster: Difference between revisions
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That's really all you need to have to get started. If you don't have a particular project in mind, you may use some [[DOCK Blaster::Sample_Data Sample Data]] to experiment with. To read more, please consult the topics below. | That's really all you need to have to get started. If you don't have a particular project in mind, you may use some [[DOCK Blaster::Sample_Data Sample Data]] to experiment with. To read more, please consult the topics below. | ||
* [[DOCK_Blaster:Preliminaries]] | |||
* [[DOCK Blaster:Prepare Input]] | * [[DOCK Blaster:Prepare Input]] | ||
** [[DOCK Blaster:Prepare Receptor]] | ** [[DOCK Blaster:Prepare Receptor]] | ||
Revision as of 22:42, 26 October 2006
DOCK Blaster is a free web based molecular docking and virtual screening service, on the web at [1].
To get started, you will need the structure of the target in PDB format, and some specification of the binding site. Currently, we support one of two forms: * a) a docked ligand, which is used both as a control and indication of where to dock, in mol2 format. If you don't have a docked ligand, don't worry, you can also specify:
- b) residues making up the binding site, in PDB format. The center of interia of these atoms should be about the same place that the center of a docked molecule would be.
That's really all you need to have to get started. If you don't have a particular project in mind, you may use some DOCK Blaster::Sample_Data Sample Data to experiment with. To read more, please consult the topics below.
We welcome your feedback about DOCK Blaster. Please write to us at comments at docking.org.