DOCK 3.7 2016/09/16 abl1 Tutorial(building)

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Revision as of 19:20, 17 September 2016 by Jklyu (talk | contribs)
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This tutorial uses the DOCK-3.7-beta3. This is a supplemental tutorial for DOCK 3.7 2015/04/15 abl1 Tutorial. Former one works well and is very simple and clear, but some updates should be mentioned in this tutorial.

This is for a Linux environment and the scripts assume that you are running on SGE queueing system.

Set up directories

  • Go to the working directory of your account
cd /nfs/home/$USERNAME/work

PS: $USERNAME is your username log on the cluster.

  • Create directory called "DOCK_tutorial"
mkdir DOCK_tutorial

Get databases

  • There are two ways to get databases:

1. get databases via the script autodude_db_download.py in the DOCK 3.7

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