DOCK 3.7: Difference between revisions
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DOCK 3.7 is available at [http://dock.compbio.ucsf.edu/DOCK3.7/ http://dock.compbio.ucsf.edu/DOCK3.7/]. | |||
It is the latest version in the [[DOCK 3]] series of docking programs developed and used by the [[Shoichet Lab]]. | |||
http://dock.compbio.ucsf.edu/DOCK3.7/ | To cite DOCK3.7 paper, please use | ||
[http://www.plosone.org/article/info:doi/10.1371/journal.pone.0075992 Coleman, Carchia, Sterling, Irwin & Shoichet, PLOS ONE 2013.] | [http://www.plosone.org/article/info:doi/10.1371/journal.pone.0075992 Coleman, Carchia, Sterling, Irwin & Shoichet, PLOS ONE 2013.] | ||
= Topics = | |||
* [[INDOCK 3.7]] | |||
[[INDOCK 3.7]] | * [[mol2db2]] and [[mol2db2 format]] | ||
* [[Ligand preparation]] | |||
[[mol2db2]] and [[mol2db2 format]] | * [[Protein Target Preparation]] (Adding Static Waters to the Protein Structure) (Flexible Docking) | ||
* [[ZINC Subset DB2 file locations]] | |||
[[Ligand preparation]] | * [[Running DOCK 3.7]] | ||
* [[Analyzing DOCK Results]] | |||
[[Protein Target Preparation]] (Adding Static Waters to the Protein Structure) (Flexible Docking) | * [http://autodude.docking.org/ Auto-DUD-E Test Set] (external site) | ||
[[ZINC Subset DB2 file locations]] | |||
[[Running DOCK 3.7]] | |||
[[Analyzing DOCK Results]] | |||
[http://autodude.docking.org/ Auto-DUD-E Test Set] (external site) | |||
{{Template:CC-BY-SA-30}} | {{Template:CC-BY-SA-30}} | ||
{{Template:Coleman}} | {{Template:Coleman}} | ||
[[Category:DOCK 3.7]] | [[Category:DOCK 3.7]] | ||
[[Category:DOCK 3]] | |||
[[Category:DOCK]] | |||
[[Category:Software]] |
Revision as of 16:57, 14 February 2014
DOCK 3.7 is available at http://dock.compbio.ucsf.edu/DOCK3.7/. It is the latest version in the DOCK 3 series of docking programs developed and used by the Shoichet Lab. To cite DOCK3.7 paper, please use Coleman, Carchia, Sterling, Irwin & Shoichet, PLOS ONE 2013.
Topics
- INDOCK 3.7
- mol2db2 and mol2db2 format
- Ligand preparation
- Protein Target Preparation (Adding Static Waters to the Protein Structure) (Flexible Docking)
- ZINC Subset DB2 file locations
- Running DOCK 3.7
- Analyzing DOCK Results
- Auto-DUD-E Test Set (external site)
http://i.creativecommons.org/l/by-sa/3.0/88x31.png
This work is licensed under the Creative Commons Attribution-ShareAlike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/3.0/ This page is adapted from "DOCK3.7 Documentation" by Ryan G. Coleman. Based on a work at https://sites.google.com/site/dock37wiki/.