DOCK:Problems

This is the UCSF DOCK problem page. There are other problem pages too:

• DOCK Blaster:Problems
• DUD:Problems
• DOCK:Problems
• Problems - all other problems go here.

Docking problems in general

• treatment of entropy
• treatment of receptor desolvation
• treatment of induced-fit effects
• ligand internal energy

DOCK 3.5.54

• prepare new distribution
• "collisions" (fixed in DOCK 3.5.54 revision 316)
• inline out of box detection (fixed in DOCK 3.5.54 revision 274)
• ligand internal energy
• write out multiple structures for PLOP