DOCK:FAQ: Difference between revisions
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This is the DOCK FAQ. It covers all versions of DOCK. There are other FAQs available at this site, as follows: [[ZINC:FAQ]], [[DUD:FAQ]], [[DOCK Blaster:FAQ]], [[THC:FAQ]], and [[FAQ]] for everything not covered by one of those products. | This is the DOCK FAQ. It covers all versions of DOCK. There are other FAQs available at this site, as follows: [[ZINC:FAQ]], [[DUD:FAQ]], [[DOCK Blaster:FAQ]], [[THC:FAQ]], and [[FAQ]] for everything not covered by one of those products. | ||
= All DOCK versions = | |||
== | == Q0.1. What is DOCK? == | ||
== | == Q0.2. What is the current version of DOCK? == | ||
DOCK 6.1 was released in December 2006. | |||
== DOCK 6 | == Q0.3. What about accessory programs? == | ||
Where do I get DMS? DMS is [http://www.cgl.ucsf.edu/Overview/software.html freely available] from the UCSF Computer Graphics Lab. | |||
= DOCK 6 Specific = | |||
== Q6.1 I get an error with mmolex when compiling DOCK6? == | |||
[[FAQ:mmolex]] | |||
== Q6.2 I get an error in /usr/include/mpi++.h:1473 == | |||
[[FAQ:MPICH2]] | |||
* When running DOCK with amber_score, I get can't open file lig.1.amber.pdb [[FAQ:AMBERHOME]] | * When running DOCK with amber_score, I get can't open file lig.1.amber.pdb [[FAQ:AMBERHOME]] | ||
== DOCK 5 | = DOCK 5 Specific = | ||
<b>Note: we recommend upgrading from DOCK5.x to DOCK 6. There is really no good reason to still be using DOCK 5. Many of the problems in DOCK 5 are fixed in DOCK 6. </b> | |||
= DOCK 4 Specific = | |||
<b>Note: DOCK 4.0.2 is an old program, but still in use by some people for some purposes.</b> | |||
== Q4.1 Question 1 ? == | |||
== Q4.2 Question 2 ? == | |||
= DOCK 3.5.54 Specific = | |||
<b>Note: DOCK 3.5.54 is the version used by DOCK Blaster. However, if you are using DOCK 3.5.54 via DOCK Blaster, we encourage you to use the FAQ for the interface [[DOCK Blaster:FAQ]]</b> | |||
== | == Qn. What if I have a question that is not covered here? == | ||
[[Category:DOCK]] | |||
[[Category:FAQ]] | |||
Revision as of 20:58, 20 September 2007
This is the DOCK FAQ. It covers all versions of DOCK. There are other FAQs available at this site, as follows: ZINC:FAQ, DUD:FAQ, DOCK Blaster:FAQ, THC:FAQ, and FAQ for everything not covered by one of those products.
All DOCK versions
Q0.1. What is DOCK?
Q0.2. What is the current version of DOCK?
DOCK 6.1 was released in December 2006.
Q0.3. What about accessory programs?
Where do I get DMS? DMS is freely available from the UCSF Computer Graphics Lab.
DOCK 6 Specific
Q6.1 I get an error with mmolex when compiling DOCK6?
FAQ:mmolex
Q6.2 I get an error in /usr/include/mpi++.h:1473
- When running DOCK with amber_score, I get can't open file lig.1.amber.pdb FAQ:AMBERHOME
DOCK 5 Specific
Note: we recommend upgrading from DOCK5.x to DOCK 6. There is really no good reason to still be using DOCK 5. Many of the problems in DOCK 5 are fixed in DOCK 6.
DOCK 4 Specific
Note: DOCK 4.0.2 is an old program, but still in use by some people for some purposes.
Q4.1 Question 1 ?
Q4.2 Question 2 ?
DOCK 3.5.54 Specific
Note: DOCK 3.5.54 is the version used by DOCK Blaster. However, if you are using DOCK 3.5.54 via DOCK Blaster, we encourage you to use the FAQ for the interface DOCK Blaster:FAQ