Creating Maps on SmallWorld: Revision history

9 January 2020

• curprev 00:1100:11, 9 January 2020‎ Jyoung talk contribs‎ 10,248 bytes +23‎ No edit summary
• curprev 00:1100:11, 9 January 2020‎ Jyoung talk contribs‎ 10,225 bytes +26‎ No edit summary

19 July 2019

• curprev 18:3518:35, 19 July 2019‎ Jyoung talk contribs‎ 10,199 bytes +4‎ →‎Step 3-4 Combined: Rather than concatenating and sorting, merge the map file chunks (assuming they are already sorted)
• curprev 18:3518:35, 19 July 2019‎ Jyoung talk contribs‎ 10,195 bytes −1‎ →‎Step 3-4 Combined: Rather than concatenating and sorting, merge the map file chunks (assuming they are already sorted)
• curprev 18:3418:34, 19 July 2019‎ Jyoung talk contribs‎ 10,196 bytes 0‎ →‎Step 3-4 Combined: Rather than concatenating and sorting, merge the map file chunks (assuming they are already sorted)
• curprev 18:3418:34, 19 July 2019‎ Jyoung talk contribs‎ 10,196 bytes +132‎ →‎Step 3-4 Combined: Rather than concatenating and sorting, merge the map file chunks (assuming they are already sorted)
• curprev 18:3318:33, 19 July 2019‎ Jyoung talk contribs‎ 10,064 bytes +711‎ No edit summary

15 July 2019

• curprev 22:2922:29, 15 July 2019‎ Jyoung talk contribs‎ 9,353 bytes 0‎ →‎Step 2: Processing large SMILES files in SmallWorld GREATER than 1 Billion
• curprev 22:2822:28, 15 July 2019‎ Jyoung talk contribs‎ 9,353 bytes +23‎ →‎Step 2: Processing large SMILES files in SmallWorld
• curprev 18:0518:05, 15 July 2019‎ Jyoung talk contribs‎ 9,330 bytes +53‎ →‎Step 6: Move the file to the final location
• curprev 18:0518:05, 15 July 2019‎ Jyoung talk contribs‎ 9,277 bytes +221‎ →‎Step 5: Copy the completed file back to /ex9

12 July 2019

• curprev 21:5221:52, 12 July 2019‎ Jyoung talk contribs‎ 9,056 bytes +243‎ →‎Step 2: Generate the map files
• curprev 21:4921:49, 12 July 2019‎ Jyoung talk contribs‎ 8,813 bytes +8‎ →‎Processing large SMILES files in SmallWorld
• curprev 21:4921:49, 12 July 2019‎ Jyoung talk contribs‎ 8,805 bytes +4‎ →‎Step 5: Copy the completed file back to /ex9
• curprev 21:4921:49, 12 July 2019‎ Jyoung talk contribs‎ 8,801 bytes +423‎ →‎Processing large SMILES files in SmallWorld
• curprev 21:3721:37, 12 July 2019‎ Jyoung talk contribs‎ 8,378 bytes +720‎ →‎Important! Currently, we only run SmallWorld map generation on n-9-22
• curprev 21:3121:31, 12 July 2019‎ Jyoung talk contribs‎ 7,658 bytes +14‎ →‎Step 2: Process the chunks in SmallWorld using the command above
• curprev 21:2521:25, 12 July 2019‎ Jyoung talk contribs‎ 7,644 bytes +32‎ No edit summary
• curprev 21:2421:24, 12 July 2019‎ Jyoung talk contribs‎ 7,612 bytes +231‎ →‎What if you already created a .anon.map file from your new smiles, and simply want to combine the two separate .anon.map files into a single .anon.map file?
• curprev 21:2221:22, 12 July 2019‎ Jyoung talk contribs‎ 7,381 bytes +19‎ →‎Step 2: Process the chunks in SmallWorld using the command above
• curprev 21:2121:21, 12 July 2019‎ Jyoung talk contribs‎ 7,362 bytes +455‎ →‎Processing large SMILES files in SmallWorld
• curprev 21:1221:12, 12 July 2019‎ Jyoung talk contribs‎ 6,907 bytes −1‎ →‎Step 2: Process the chunks in SmallWorld using the command above
• curprev 21:1221:12, 12 July 2019‎ Jyoung talk contribs‎ 6,908 bytes +1,355‎ →‎Step 2: Generate the map files

14 May 2019

• curprev 17:2817:28, 14 May 2019‎ Jyoung talk contribs‎ 5,553 bytes −14‎ No edit summary

13 May 2019

• curprev 21:1321:13, 13 May 2019‎ Jyoung talk contribs‎ m 5,567 bytes 0‎ →‎Step 2.5 Incremental Updates
• curprev 21:1121:11, 13 May 2019‎ Jyoung talk contribs‎ 5,567 bytes +83‎ →‎Install
• curprev 21:0921:09, 13 May 2019‎ Jyoung talk contribs‎ 5,484 bytes +217‎ No edit summary
• curprev 21:0421:04, 13 May 2019‎ Jyoung talk contribs‎ 5,267 bytes +409‎ →‎Step 2.5 Incremental Updates
• curprev 20:3120:31, 13 May 2019‎ Jyoung talk contribs‎ 4,858 bytes +99‎ →‎Step 2.5 Incremental Updates
• curprev 18:3218:32, 13 May 2019‎ Jyoung talk contribs‎ 4,759 bytes +73‎ →‎You can run this script on any machine

9 May 2019

• curprev 21:3221:32, 9 May 2019‎ Jyoung talk contribs‎ 4,686 bytes +476‎ →‎Step 2.5 Incremental Updates

8 May 2019

• curprev 18:4018:40, 8 May 2019‎ Jyoung talk contribs‎ m 4,210 bytes −3‎ →‎Make a copy and modify the bash script below with the name of your new map file
• curprev 18:4018:40, 8 May 2019‎ Jyoung talk contribs‎ 4,213 bytes −5‎ →‎If you have a new SMILES file .smi that you want to combine with an existing map file, first run the map command in Step 2 for the new file.
• curprev 18:1818:18, 8 May 2019‎ Jyoung talk contribs‎ 4,218 bytes +575‎ →‎Step 2.5 Incremental Updates

6 May 2019

• curprev 19:0019:00, 6 May 2019‎ Jyoung talk contribs‎ 3,643 bytes +151‎ →‎Step 2: Generate the map files
• curprev 18:5718:57, 6 May 2019‎ Jyoung talk contribs‎ 3,492 bytes +9‎ →‎Step 2: Generate the map files
• curprev 18:5618:56, 6 May 2019‎ Jyoung talk contribs‎ 3,483 bytes +336‎ →‎Step 2: Generate the map files
• curprev 18:3718:37, 6 May 2019‎ Jyoung talk contribs‎ 3,147 bytes +419‎ No edit summary
• curprev 18:1718:17, 6 May 2019‎ Jyoung talk contribs‎ 2,728 bytes +1,041‎ →‎Run
• curprev 17:4517:45, 6 May 2019‎ Jyoung talk contribs‎ 1,687 bytes +7‎ →‎Step 2: Generate the map files

10 April 2019

• curprev 19:2419:24, 10 April 2019‎ Jyoung talk contribs‎ 1,680 bytes +1‎ →‎Step 1: Create the /sw directory
• curprev 19:2419:24, 10 April 2019‎ Jyoung talk contribs‎ 1,679 bytes +11‎ →‎Step 1: Create the /sw directory
• curprev 19:2319:23, 10 April 2019‎ Jyoung talk contribs‎ 1,668 bytes +4‎ →‎Step 1: Create the /sw directory
• curprev 19:2319:23, 10 April 2019‎ Jyoung talk contribs‎ 1,664 bytes +133‎ →‎Step 1: Create the /sw directory
• curprev 19:1919:19, 10 April 2019‎ Jyoung talk contribs‎ 1,531 bytes +6‎ No edit summary
• curprev 19:1819:18, 10 April 2019‎ Jyoung talk contribs‎ 1,525 bytes −1‎ →‎Step 1: Set SWDIR environment variable
• curprev 19:1819:18, 10 April 2019‎ Jyoung talk contribs‎ 1,526 bytes +1,526‎ Created page with "Written by Jennifer Young on April 10, 2019 ==Install== ===Step 1: Create the /sw directory=== SmallWorld requires a /sw directory which contains /anon and /maps The /sw dire..."