Category:Free: Difference between revisions

From DISI
Jump to navigation Jump to search
No edit summary
No edit summary
Line 34: Line 34:
* [http://www.cheminformatics.org/datasets/li/bbp2.smi Blood-brain-barrier penetration set]
* [http://www.cheminformatics.org/datasets/li/bbp2.smi Blood-brain-barrier penetration set]
* [http://cheminfo.informatics.indiana.edu/cicc/cis/index.php/Main_Page Chemical Information Wiki]
* [http://cheminfo.informatics.indiana.edu/cicc/cis/index.php/Main_Page Chemical Information Wiki]
= Open Source Drug Discovery =
Open Source is well known in the computer science community, and indeed in bioinformatics. A number of initiatives that include small molecule drug design have been launched. They are attempting to discover 'open source drugs', however strange that may sound. We ignore here initiatives that aim to develop vaccines, not because they are not important, but because our interest is in small molecules.
* [http://bioforge.net BioForge] : A community for biological innovation
** [http://www.bios.net BIOS : Biological Innovation for Open Society]
** [http://www.patentlens.net Patent Lens ] Global resource for increasing patent transparency
* [http://www.tropicaldisease.org TDI : tropical disease initiative]
** [http://www.thesynapticleap.org TSL : The Synaptic Leap]
* [http://www.mmv.org MMV : Medicines for Malaria Venture]
* [http://www.dndi.org DNDi : Drugs for Neglected Diseases initiative]
* [http://www.tballiance.org TBA : TB Alliance]
* [http://www.oneworldhealth.org OWH : One World Health]




[[Category:Portal]]
[[Category:Portal]]
[[Category:Attributes]]
[[Category:Attributes]]

Revision as of 17:07, 11 March 2014

Free databases, programs and services are tagged as free to make them easy to find here. Some things are only free to academics, or qualified academics. Others require a contract, but cost no money. You must read the fine print. Here we collect things that are generally freely available at least to academics. Please also see. Distinguish between free to use (gratis) vs free to develop (libre).

Free cheminformatics software

Most completely free software for chemical informatics is part of the Blue Obelisk Movement. We note some of these, as well as other packages, below:

  • JMol - so good, Nature picked it.
  • CDK - many of these packages, such as Bioclipse, make use of CDK.
  • OpenBabel/JOELib - format conversion
  • Bioclipse - a visual platform for chemical and bio-informatics.
  • Knime - a free Scitegic PipelinePilot style program
  • MayaChemTools - a growing collection of Perl scripts, modules, and classes to support day-to-day computational discovery needs


Free databases

  • KEGG
  • ChemDB @ UCI - public database of small molecules and related chemical informatics resources
  • SuperDrug - a conformational drug database
  • SuperNatural - searchable database of available natural compounds
  • SuperLigands - a PDB ligand database
  • BioMeta - a database of metabolites derived from KEGG
  • ChemBlast - a tool to find the same ligand in many PDB structures

Free datasets

Open Source Drug Discovery

Open Source is well known in the computer science community, and indeed in bioinformatics. A number of initiatives that include small molecule drug design have been launched. They are attempting to discover 'open source drugs', however strange that may sound. We ignore here initiatives that aim to develop vaccines, not because they are not important, but because our interest is in small molecules.

Subcategories

This category has the following 2 subcategories, out of 2 total.

Z

Pages in category "Free"

The following 17 pages are in this category, out of 17 total.