What Can Dock Do
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We and others have used DOCK for the following applications:
- predict binding modes of small molecule-protein complexes
- search databases of ligands for compounds that inhibit enzyme activity
- search databases of ligands for compounds that bind a particular protein
- search databases of ligands for compounds that bind nucleic acid targets
- examine possible binding orientations of protein-protein and protein-DNA complexes
- help guide synthetic efforts by examining small molecules that are computationally derivatized
- many more...
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