What Can Dock Do

   We and others have used DOCK for the following applications:

       * predict binding modes of small molecule-protein complexes
       * search databases of ligands for compounds that inhibit enzyme activity
       * search databases of ligands for compounds that bind a particular protein
       * search databases of ligands for compounds that bind nucleic acid targets
       * examine possible binding orientations of protein-protein and protein-DNA complexes
       * help guide synthetic efforts by examining small molecules that are computationally derivatized
       * many more...