What Can Dock Do
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We and others have used DOCK for the following applications:
* predict binding modes of small molecule-protein complexes * search databases of ligands for compounds that inhibit enzyme activity * search databases of ligands for compounds that bind a particular protein * search databases of ligands for compounds that bind nucleic acid targets * examine possible binding orientations of protein-protein and protein-DNA complexes * help guide synthetic efforts by examining small molecules that are computationally derivatized * many more...