Inspecting electron density maps

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Revision as of 19:10, 27 October 2010 by Rgc (talk | contribs) (copied & pasted from email from oliv)
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Download coordinates and structure factor file

  1. Download 3ODU.pdb
  2. Download 3odu-sf.cif

Open coot 

/raid3/software/coot/coot-0.6-Linux-x86_64/bin/coot &

Load molecule and map

  1. File-> Open Coordinates -> 3ODU.pdb
  2. File-> Open MTZ, mmCIF, fcf or phs.. -> 3odu-sf.cif
  3. Draw -> Go to atom > Chain A, residue 1500 -> Apply

Coot ABC

  • A) Rotate with left mouse button
  • B) You can center the view by clicking on the atom of interest with the middle mouse button
  • C) Zoom with right mouse button
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