Repackaging DB2 DOCK38

The following is a script for repackaging 3D pipeline results. First, here is the script:

#!/bin/bash
# make_tarballs.bash

# required parameter
RESULT_DIRECTORY=$1

# optional parameters
WORKING_DIRECTORY=${WORKING_DIRECTORY-/tmp/$(whoami)}
PACKAGES_PER_PACKAGE=${PACKAGES_PER_PACKAGE-100}
PACKAGE_TYPE=${PACKAGE_TYPE-db2.gz}
PACKAGE_TYPE_SHORT=$(echo $PACKAGE_TYPE | cut -d'.' -f1)

echo WORKING_DIRECTORY=$WORKING_DIRECTORY
mkdir -p $WORKING_DIRECTORY && cd $WORKING_DIRECTORY
mkdir -p output working tarball_split_list

echo finding
find $RESULT_DIRECTORY -name '*.tar.gz' > tarball_list.txt
echo splitting
split -l $PACKAGES_PER_PACKAGE tarball_list.txt tarball_split_list/
echo working
cd working
for f in ../tarball_split_list/*; do
        for tb in $(cat $f); do
                tar --transform='s/^.*\///' -xf $tb '*.'$PACKAGE_TYPE 2>/dev/null
        done
        tar -czf $(basename $f).$PACKAGE_TYPE_SHORT.tar.gz *.$PACKAGE_TYPE
        mv $(basename $f).$PACKAGE_TYPE_SHORT.tar.gz ../output
        rm *.$PACKAGE_TYPE
        echo $(basename $f)
done
cd ..
echo Done! Results in $PWD/output

Now, an example usage:

[user@gimel5 ~] bash make_tarballs.bash /nfs/exb/zinc22/tarballs/H17P200_H19P400.smi.batch-3d.d/out/aaa.d
finding
splitting
working
aa
ab
ac
ad
ae
af
ag
ah
ai
aj
Done! Results in /tmp/user/output