Converting SMILES to Kekule Format
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For adding molecular structures to slides/papers, SMILEs can be converted into Kekule format with the following command:
/nfs/soft/jchem/current/bin/molconvert smiles:-a {INPUT_SMILES.smi} > {OUTPUT_SMILES.smi}
The SMILES in the {OUTPUT_SMILES.smi} file will not be de-aromatized, and can be pasted into ChemDraw.