Category:PyTorch

I (Matt O'Meara) got pytorch installed December 2018

   bash

   #(DeepSEA_local) bash-4.1$ uname -a
   #Linux gimel2.cluster.ucsf.bkslab.org 2.6.32-754.6.3.el6.x86_64 #1 SMP Tue Oct 9 17:27:49 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux

   #(DeepSEA_local) bash-4.1$ gcc -v
   #Using built-in specs.
   #COLLECT_GCC=gcc
   #COLLECT_LTO_WRAPPER=/mnt/nfs/home/momeara/opt/libexec/gcc/x86_64-unknown-linux-gnu/4.9.3/lto-wrapper
   #Target: x86_64-unknown-linux-gnu
   #Configured with: ./configure --prefix=/mnt/nfs/home/momeara/opt/
   #Thread model: posix
   #gcc version 4.9.3 (GCC)

   export CC="/mnt/nfs/home/momeara/opt/bin/gcc"
   export CXX="/mnt/nfs/home/momeara/opt/bin/g++"
   export CPLUS_INCLUDE_PATH="/mnt/nfs/home/momeara/opt/include:/nfs/soft/cuda/include"
   export C_INCLUDE_PATH="/mnt/nfs/home/momeara/opt/include:/nfs/soft/cuda/include"
   export LIBRARY_PATH="/mnt/nfs/home/momeara/opt/lib:/mnt/nfs/home/momeara/opt/lib64:/nfs/soft/cuda/lib64"
   export LD_LIBRARY_PATH="/nfs/home/momeara/ex9/collaborations/DeepSEA/cuda/lib64:$LD_LIBRARY_PATH"
   export LD_LIBRARY_PATH="/nfs/soft/cuda/lib64:$LD_LIBRARY_PATH"
   export LD_LIBRARY_PATH="/nfs/soft/cuda10.0/extras/CUPTI/lib64:$LD_LIBRARY_PATH"
   export LD_LIBRARY_PATH="/mnt/nfs/home/momeara/opt/lib:/mnt/nfs/home/momeara/opt/lib64:$LD_LIBRARY_PATH"
   export LD_LIBRARY_PATH="/nfs/home/momeara/ex9/collaborations/DeepSEA/nccl/nccl_2.3.5-2+cuda9.0_x86_64/lib:/nfs/soft/cuda-10.0/lib64:$LD_LIBRARY_PATH"
   export PATH="/nfs/soft/cuda10.0/bin:$PATH"
   export PATH="/nfs/ex9/work/momeara/tools/anaconda3//bin:$PATH"
   export PATH="/nfs/ex9/work/momeara/tools/anaconda3/envs/DeepSEA_local/bin:$PATH"

   cd ~/ex9/collaborations/DeepSEA/pytorch
   git clone --recursive https://github.com/pytorch/pytorch
   cd pytorch
   git fetch --all --tags --prune
   git checkout db5d3131d16f57abd4f13d3f4b885d5f67bf6644 #v1.0.0 branch