User contributions for Frodo

14 February 2014

• 03:5103:51, 14 February 2014 diff hist +101‎ Dock Users' Meeting Minutes (DUMM) ‎No edit summary
• 03:5003:50, 14 February 2014 diff hist +55‎ Multimol2db.py ‎No edit summary
• 03:4603:46, 14 February 2014 diff hist +54‎ KEGG ‎No edit summary
• 03:4503:45, 14 February 2014 diff hist +61‎ Jerome Hert ‎No edit summary current
• 03:4403:44, 14 February 2014 diff hist +43‎ Getting Started ‎No edit summary
• 03:4303:43, 14 February 2014 diff hist +70‎ GPCR Waiver Wire ‎No edit summary
• 03:4303:43, 14 February 2014 diff hist +251‎ Hypervisor ‎No edit summary
• 03:4003:40, 14 February 2014 diff hist +83‎ Flex drive.tbl ‎No edit summary
• 03:3903:39, 14 February 2014 diff hist +46‎ Flexible docking code ‎No edit summary current
• 03:3903:39, 14 February 2014 diff hist +46‎ FlexPepDock ‎No edit summary current
• 03:3803:38, 14 February 2014 diff hist +82‎ Enm explorer ‎No edit summary
• 03:3703:37, 14 February 2014 diff hist −65‎ Computer aided drug discovery ‎No edit summary current
• 03:3503:35, 14 February 2014 diff hist +44‎ Filter.py: ‎No edit summary
• 03:3403:34, 14 February 2014 diff hist +44‎ Example of Disorder ‎No edit summary
• 03:2303:23, 14 February 2014 diff hist +100‎ Public databases ‎No edit summary
• 03:2203:22, 14 February 2014 diff hist +68‎ Eplop ‎No edit summary current
• 03:2103:21, 14 February 2014 diff hist +87‎ ELC ‎No edit summary
• 03:2003:20, 14 February 2014 diff hist +90‎ Drugs sans targets ‎No edit summary
• 03:1803:18, 14 February 2014 diff hist +44‎ Dock Sampling ‎No edit summary
• 03:1803:18, 14 February 2014 diff hist 0‎ Disk full ‎No edit summary
• 03:1703:17, 14 February 2014 diff hist +23‎ Dependencies ‎No edit summary current
• 03:1603:16, 14 February 2014 diff hist −13‎ DOCK 5 ‎No edit summary
• 03:1403:14, 14 February 2014 diff hist +44‎ N Curl zinc ‎ Frodo moved page Curl zinc to Get ZINC under program control: Clearer name says what it is about. current
• 03:1403:14, 14 February 2014 diff hist 0‎ m Get ZINC under program control ‎ Frodo moved page Curl zinc to Get ZINC under program control: Clearer name says what it is about.
• 03:1403:14, 14 February 2014 diff hist +65‎ Get ZINC under program control ‎No edit summary
• 03:0703:07, 14 February 2014 diff hist +42‎ Choosing a subset ‎No edit summary current
• 03:0603:06, 14 February 2014 diff hist +104‎ Chemoinformatics Waiver Wire ‎No edit summary
• 03:0503:05, 14 February 2014 diff hist +52‎ Chemdraw figure preparation ‎No edit summary current
• 03:0403:04, 14 February 2014 diff hist +73‎ Chembl processing protocol ‎No edit summary
• 03:0403:04, 14 February 2014 diff hist 0‎ Checkout dockenv ‎No edit summary
• 03:0303:03, 14 February 2014 diff hist +79‎ Checkout dockenv ‎No edit summary
• 03:0203:02, 14 February 2014 diff hist −51‎ ChEMBL API ‎No edit summary
• 02:5902:59, 14 February 2014 diff hist +55‎ Cassidy clustering ‎No edit summary
• 02:5802:58, 14 February 2014 diff hist +81‎ Calculate DOCK6 RMSD ‎No edit summary
• 02:5702:57, 14 February 2014 diff hist +98‎ CSD ‎No edit summary
• 02:5502:55, 14 February 2014 diff hist +76‎ Basic Tutorial ‎No edit summary
• 02:5502:55, 14 February 2014 diff hist +53‎ SEA ‎No edit summary
• 02:5402:54, 14 February 2014 diff hist +103‎ BKS lab Structure preparation ‎No edit summary
• 02:5202:52, 14 February 2014 diff hist +45‎ Cluster 4 ‎No edit summary
• 02:2202:22, 14 February 2014 diff hist −20‎ Category:DOCK 3.7 ‎ Blanked the page
• 02:1602:16, 14 February 2014 diff hist +20‎ N Category:DOCK 3.7 ‎ Created page with "{{catmain|DOCK 3.7}}"

13 February 2014

• 21:5121:51, 13 February 2014 diff hist −82‎ DOCK 3.6 ‎No edit summary
• 21:4221:42, 13 February 2014 diff hist +31‎ DOCK 3.7 ‎No edit summary
• 21:4121:41, 13 February 2014 diff hist +3,353‎ N Analyzing DOCK Results ‎ Created page with "Analyzing DOCK results The dock37tools in $d37 contain various analysis programs. Once your jobs are done, you can run: $d37/extract_all.py If your ran a prospective run, it..."
• 21:4021:40, 13 February 2014 diff hist +1,567‎ N Running DOCK 3.7 ‎ Created page with "Setting up an alias for the dock37tools directory in $DOCK_BASE/src/dock37tools/ is highly recommended, though you don't need it if you don't want it. Assume you have it set a..." current
• 21:3921:39, 13 February 2014 diff hist +4‎ DOCK 3.7 ‎No edit summary
• 21:3821:38, 13 February 2014 diff hist +555‎ N ZINC Subset DB2 file locations ‎ Created page with "On the UCSF cluster: /raida/db/rgc/frags-now-marvin Fragments available now /raida/db/rgc/frags-all-marvin All fragments available now or on-demand quickly /raida/db/rgc/lead..."
• 21:3721:37, 13 February 2014 diff hist +3,536‎ N Flexible Docking ‎ Created page with """"Flexible Docking""" For citations and example use, please see Citations for DOCK3.7, Fischer, Coleman et al. Input for flexible docking requires a single PDB file with al..." current
• 21:3521:35, 13 February 2014 diff hist +672‎ N Adding Static Waters to the Protein Structure ‎ Created page with "If you have ordered waters in your structure, DOCK3.7 can use them, but you have to add hydrogens 'manually' using some visualization program and your intuition. Once this is ..."
• 21:3421:34, 13 February 2014 diff hist +1,669‎ N Protein Target Preparation ‎ Created page with "Protein Target Preparation be-blasti is still the preferred method of downloading PDB files and splitting them into rec.pdb and xtal-lig.pdb files. Run it with be_blasti.csh ..."