Manage Lab Websites
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List of Websites
| Website | Machine:Port | Run on | Hosted in (httpd/conf.d) | Working |
|---|---|---|---|---|
| Amis: https://amis.docking.org/ | Files2 (169.230.75.3) | Yes | ||
| Arthor: https://arthor.docking.org/ | n-1-136:8080 | Tomcat | Files2 (169.230.75.3) | Yes |
| BKSLab: http://www.bkslab.org/ | gimel:5002 | Supervisord | Tau (169.230.26.43) | Yes |
| Blaster: https://blaster.docking.org/ | Tau (169.230.26.43, can not be moved to files2) | Yes | ||
| Cartblanche: https://cartblanche.docking.org/ | Files2 (169.230.75.3) | Yes | ||
| Covalent: http://covalent.docking.org/ | Tau (169.230.26.43, can not be moved to files2) | Yes | ||
| DSF: https://dsf.docking.org/ | Tau (169.230.26.43) | Yes | ||
| Duc: https://duc.docking.org/ | Tau (169.230.26.43) | No | ||
| Dud: https://dud.docking.org/ | Tau (169.230.26.43, can not be moved to files2) | showing wrong website | ||
| Dude18: http://dude18.docking.org/ | Tau (169.230.26.43) | No | ||
| Dude: http://dude.docking.org/ | Tau (169.230.26.43, can not be moved to files2) | Yes | ||
| Dudez: http://dudez.docking.org/ | Tau (169.230.26.43) | Yes | ||
| Excipients: http://excipients.docking.org/ | gimel:8093 | Files2 (169.230.75.3) | Yes | |
| Gitlab: https://gitlab.docking.org/ | Tau (169.230.26.43) | No | ||
| HG: https://hg.docking.org/ | Tau (169.230.26.43) | showing wrong website | ||
| IrwinLab: http://irwinlab.compbio.ucsf.edu/ | gimel:5004 | Supervisord | Tau (169.230.26.43) | Yes |
| Khanh: http://khanh.docking.org/ | Tau (169.230.26.43) | Yes | ||
| Metabolite: http://metabolite.docking.org/ | Tau (169.230.26.43, can not be moved to files2) | showing wrong website | ||
| Deepchemworkshop: http://deepchemworkshop.docking.org/ | Tau (169.230.26.43) | Yes | ||
| Prices: http://prices.docking.org/ | Tau (169.230.26.43) | No | ||
| Psicquic: http://psicquic.docking.org/ | Tau (169.230.26.43) | Yes (broken???) | ||
| Reactor: http://reactor.docking.org/ | Tau (169.230.26.43) | Yes | ||
| Transporters: http://transporters.ucsf.bkslab.org/ | Tau (169.230.26.43) | Yes | ||
| Sea16: http://sea16.docking.org/ | gimel:8086 | Files2 (169.230.75.3) | Yes | |
| SEC: http://sec.docking.org/ | Tau (169.230.26.43) | Yes | ||
| Smallworld Public: http://sw.docking.org/ | abacus:5020 | screen | Files2 (169.230.75.3) | Yes |
| Smallworld Private: http://swp.docking.org/ | abacus:8080 | screen | Files2 (169.230.75.3) | Yes |
| Smallworld Super Private: http://swc.docking.org/ | abacus:5099 | screen | Files2 (169.230.75.3) | Yes |
| Stats: http://stats.docking.org/ | Tau (169.230.26.43, can not be moved to files2) | No | ||
| Symp: http://symp.docking.org/ | Tau (169.230.26.43) | No | ||
| TLDR http://tldr.docking.org/ | gimel2:5000 | Supervisord | Tau (169.230.26.43) | Yes |
| Tool-Selector: http://tool-selector.ucsf.bkslab.org/ | Tau (169.230.26.43) | Yes | ||
| Transportal: http://transportal.docking.org/ | n-9-22 : port 8123 | screen | Tau (169.230.26.43) | Yes |
| Upload: http://upload.docking.org/ | Tau (169.230.26.43) | Yes | ||
| Zinc12: http://zinc12.docking.org/ | Tau (169.230.26.43, can not be moved to files2) | Yes | ||
| Zinc15: http://zinc.docking.org/ | Files2 (169.230.75.3) | Yes | ||
| Zinc20: http://zinc20.docking.org/ | Files2 (169.230.75.3) | Yes |
Restart Instructions after UPS
For websites running on Screen
- Become khtang on gimel
$ screen -ls
21546.SEA (Detached) 23528.transportal (Detached) 22877.conference (Detached) 16132.upload (Detached) 24786.oeb_lib_building (Detached) 4796.ShopAppMol (Detached) 19162.FASTROCS-server (Detached)
$ screen -r <screen_id>
SEA
Become www on gimel2
$ cd /nfs/soft/www/apps/seadev/ On bash shell $ source tools/anaconda2/bin/activate sea16 $ cd work/seaware/seaware-academic $ make SEAserver-stop-devel $ make all $ make SEAserver-start-devel
Transportal
$ cd /mnt/nfs/soft/www/apps/transportal/src/transportal $ source venv/bin/activate.csh $ python manage.py runserver 0.0.0.0:8123
For websites running on Supervisord
- Become root on server the website runs on
$ supervisorctl status $ supervisorctl restart <name> i.e $ supervisorctl restart bks-lab $ supervisorctl restart tools18