Installing msms
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installation notes
Make a directory:
mkdir msms
go to the dir:
cd /your/path/msms
Get it from the web:
wget http://mgltools.scripps.edu/downloads/tars/releases/MSMSRELEASE/REL2.6.1/msms_i86_64Linux2_2.6.1.tar.gz
Unzip it:
tar -xzvf msms_i86_64Linux2_2.6.1.tar.gz
Make some symbolic links:
ln -s /your/path/msms/msms.x86_64Linux2.2.6.1.staticgcc msms
If you do not have nawk, make a link to awk.
ln -s `which awk` nawk
your done.
You might want to add it to your path.