Inspecting electron density maps

From DISI
Revision as of 19:10, 27 October 2010 by Rgc (talk | contribs)
Jump to navigation Jump to search

Download coordinates and structure factor file

  1. Download 3ODU.pdb
  2. Download 3odu-sf.cif

Open coot 

/raid3/software/coot/coot-0.6-Linux-x86_64/bin/coot &

Load molecule and map

  1. File-> Open Coordinates -> 3ODU.pdb
  2. File-> Open MTZ, mmCIF, fcf or phs.. -> 3odu-sf.cif
  3. Draw -> Go to atom > Chain A, residue 1500 -> Apply

Coot ABC

  • A) Rotate with left mouse button
  • B) You can center the view by clicking on the atom of interest with the middle mouse button
  • C) Zoom with right mouse button
Retrieved from "http://wiki.docking.org/index.php?title=Inspecting_electron_density_maps&oldid=3372"