FastROCS

Overview

FastROCS is an virtual screening tool using shape comparison for potential actives discovery. It is vastly improved of ROCS in term of speed. It could automatically split the search into many parallel searches depending on how many GPU are there.

Tutorials

Install FastROCS

See Openeye python libraries There is also an installation guide on OpenEye website for alternatives. Click here

(Admin-only) Setting up FastROCS server

 This needs to take place in a GPU-enabled computer
 View FastROCS Server

Running query on FastROCS server

 View FastROCS Usage

1. Set up virtual environment

cd /nfs/home/khtang/ex9/openeye/FastROCS

source ./source_venv

2. Run search

ShapeDatabaseClient.py [-h] [--tversky] [--shapeOnly]
                             [--alternativeStarts {random,subrocs,inertialAtHeavyAtoms,inertialAtColorAtoms}]
                             server:port query results [nHits]
example: ShapeDatabaseClient.py n-9-34.cluster.ucsf.bkslab.org:8080 ZINC000000002837.sdf result.sdf