TLDR:bioisostere: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
| Line 11: | Line 11: | ||
<smiles> <transform_shortname> <mwt> <logp> | <smiles> <transform_shortname> <mwt> <logp> | ||
== Notes == | == Notes == | ||
An interactive web interface of | An interactive web interface of Bioiostere is in development | ||
The output of this app can be used by the following other modules in TLDR | |||
* blaster, for docking. | |||
* build 3d, to build docking libraries | |||
* potentially covalent, depending on warhead | |||
* cluster, to cluster the results | |||
* dude, to generate decoys | |||
* libanalysis, to get a detailed analysis of properties and targets | |||
* report2d, to get a quick summary of physical and chemical properties | |||
Revision as of 04:59, 8 August 2022
Purpose
To find analogs of your active compounds that you can use to explore SAR by catalogs around your hits.
Inputs
- a starting molecule in txt file.
- Set iteration for each transformations (conservative, medium, aggressive). For list of current transformations, check 'Project files' under 'Description'.
Outputs
- The output files are under gen<iter_num>_<transformation>.ism.
- Each file has 4 columns
<smiles> <transform_shortname> <mwt> <logp>
Notes
An interactive web interface of Bioiostere is in development
The output of this app can be used by the following other modules in TLDR
- blaster, for docking.
- build 3d, to build docking libraries
- potentially covalent, depending on warhead
- cluster, to cluster the results
- dude, to generate decoys
- libanalysis, to get a detailed analysis of properties and targets
- report2d, to get a quick summary of physical and chemical properties