DOCK 3.8: Difference between revisions
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DOCK 3.8 is the new version (Jan 2021) of ZINC. DOCK 3.8 uses a new library, [ZINC22]. | DOCK 3.8 is the new version (Jan 2021) of ZINC. DOCK 3.8 uses a new library, [ZINC22]. | ||
[[How to install DOCK 3.8]] | |||
[[How to dock using DOCK 3.8]] | |||
[[How to analyze output from DOCK 3.8]] | |||
[[How to build libraries for DOCK 3.8]] | |||
DOCK 3.8.2 is the current production version of DOCK 3, as of May 3, 2021. | DOCK 3.8.2 is the current production version of DOCK 3, as of May 3, 2021. | ||
Revision as of 22:15, 15 March 2022
DOCK 3.8 is the new version (Jan 2021) of ZINC. DOCK 3.8 uses a new library, [ZINC22].
How to analyze output from DOCK 3.8
How to build libraries for DOCK 3.8
DOCK 3.8.2 is the current production version of DOCK 3, as of May 3, 2021.
Availability
DOCK 3.8 is installed on our cluster and on Wynton. It is available on AWS via a docker container. It should be runnable on any modern HPC platform.
General Use
Mechanically, docking has the following steps.
- prepare gridfiles (dockfiles)
- select database subset to run
- move all files to the target platform
- run docking at scale
- merge the results (top_poses.py)
- move results back to your server.
- process the results (interaction fingerprint, strain filter, clustering, manual review)
- final re-extract of top poses for hit picking party.
- archive the results.
Step by Step instructions
During development, this was the script we used to explain how to dock: How to dock in DOCK3.8