Sea16 restart: Difference between revisions
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git pull | git pull | ||
rm -rf /nfs/soft/www/apps/sea/conda_sea16/anaconda2/envs/sea16/lib/python2.7/site-packages/seaserver | rm -rf /nfs/soft/www/apps/sea/conda_sea16/anaconda2/envs/sea16/lib/python2.7/site-packages/seaserver | ||
git pull | |||
make clean | |||
delete sea related libraries from your site-packages folder under the conda env | |||
make all | |||
kill all sea-server related processes e.g. from htop | |||
make SEAserver-start | |||
cd /nfs/soft/www/apps/sea/conda_sea16/anaconda2/envs/sea16/src/seaware-academic/SEAserver | cd /nfs/soft/www/apps/sea/conda_sea16/anaconda2/envs/sea16/src/seaware-academic/SEAserver | ||
python setup.py install | python setup.py install | ||
Revision as of 16:55, 15 March 2017
# update conda_sea16
ssh s_enkhee@gimel
cd /nfs/soft/www/apps/sea/conda_sea16/anaconda2/envs/sea16/src/seaware-academic/
source activate sea16 (if not works, export PATH=/nfs/soft/www/apps/sea/conda_sea16/anaconda2/envs/sea16/bin:$PATH)
git pull
rm -rf /nfs/soft/www/apps/sea/conda_sea16/anaconda2/envs/sea16/lib/python2.7/site-packages/seaserver
git pull
make clean
delete sea related libraries from your site-packages folder under the conda env
make all
kill all sea-server related processes e.g. from htop
make SEAserver-start
cd /nfs/soft/www/apps/sea/conda_sea16/anaconda2/envs/sea16/src/seaware-academic/SEAserver
python setup.py install
# restart server
ssh s_enkhee$n-1-110
cd /nfs/soft/www/apps/sea/conda_sea16/anaconda2/envs/sea16/src/seaware-academic/
source activate sea16 (if not works, export PATH=/nfs/soft/www/apps/sea/conda_sea16/anaconda2/envs/sea16/bin:$PATH)
cd SEAsever
sh scripts/run-sea-server.sh
# update sea16
ssh xyz@gimel
cd /nfs/soft/www/apps/sea/sea16/src/seaware-academic
source ../../env.csh
git pull
rm -rf /nfs/soft/www/apps/sea/sea16/lib/python2.7/site-packages/seaserver
cd /nfs/soft/www/apps/sea/sea16/src/seaware-academic/SEAserver
python setup.py install
# restart server
ssh www@n-1-110
cd /nfs/soft/www/apps/sea/sea16/src/seaware-academic
source ../../env.csh
cd SEAsever
sh scripts/run-sea-server.sh
# restart server
ssh <superuser>@n-1-110
sudo -i
screen -r
screen -dR Sea (switch to sea screen)
sh scripts/run-sea-server.sh
# how to save the old queue data
cd /nfs/soft/www/apps/sea/sea16/var/seaserver/queue
mv jobs jobs.save
mv tasks.sqlite tasks.sqllite.save
restart sea server on n-1-110.
(basically, it had too much history and that was what was slowing it down)
(do on the first day of the month and rename the old one to a month version)