More cool zinc15 tricks: Difference between revisions
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http://zinc15.docking.org/genes/SLC5A1/substances?ecfp4_fp-dice=ZINC000003875408 | http://zinc15.docking.org/genes/SLC5A1/substances?ecfp4_fp-dice=ZINC000003875408 | ||
Purchasable compounds for SLC5A1, ordered by decreasing similarity to ZINC000003875408 | |||
http://zinc15.docking.org/genes/SLC5A1/substances/subsets/purchasable+in-vitro/?ecfp4_fp-dice=ZINC000003875408 | |||
http:// | Upload a set of molecules, look them up in ZINC, output them if a) it is in ZINC, b) it matches the pattern | ||
curl -X POST -u user:pass -H "Content-Type: multipart/form-data" -F upload=@test2.smi -F identifiers=true -F structures=true -F charges=true -F scaffolds=true -F multiple=true \ | |||
"http://band.desktop.ucsf.bkslab.org:8088/substances/resolved/" -F output_format=smi -F output_fields=smiles,zinc_id -F 'structure-contains=n1ccccc1' -F suppliers= | |||
[[Category:Tutorials]] | [[Category:Tutorials]] | ||
[[Category:ZINC15]] | [[Category:ZINC15]] |
Revision as of 20:13, 8 July 2015
Here are questions you can ask. Ideally, work these into a tutorial of some kind:
Natural products = biogenic minus metabolites:
http://zinc15.docking.org/substances/subsets/biogenic.smi:zinc_id,purchasability?~features-contains=202&count=all
A second way of asking the same question:
http://zinc15.docking.org/substances.smi:zinc_id,purchasability?features-contains=203&~features-contains=202&count=all
primary amines, building blocks, for sale
http://zinc15.docking.org:8015/substances.txt:smiles,sub_id,purchasability?substance.structure:contains=[ND1][CX4]&catalog.bb=True&substance.purchasability:gt=9&count=all
purchasable class-F gpcr ligands:
http://zinc15.docking.org:8015/activities.txt:substance.smiles,substance.sub_id,substance.purchasability?subclass.name:eq=GPCR-F&substance.purchasability:gt=9&count=all
SLC5A1 glucose cotransporter and in chembl20
http://zinc15.docking.org/genes/SLC5A1/substances/?catalog.short_name=chembl20
Analogs of ZINC000003875408 that bind to SLC5A1:
http://zinc15.docking.org/genes/SLC5A1/substances?ecfp4_fp-dice=ZINC000003875408
Purchasable compounds for SLC5A1, ordered by decreasing similarity to ZINC000003875408
http://zinc15.docking.org/genes/SLC5A1/substances/subsets/purchasable+in-vitro/?ecfp4_fp-dice=ZINC000003875408
Upload a set of molecules, look them up in ZINC, output them if a) it is in ZINC, b) it matches the pattern
curl -X POST -u user:pass -H "Content-Type: multipart/form-data" -F upload=@test2.smi -F identifiers=true -F structures=true -F charges=true -F scaffolds=true -F multiple=true \ "http://band.desktop.ucsf.bkslab.org:8088/substances/resolved/" -F output_format=smi -F output_fields=smiles,zinc_id -F 'structure-contains=n1ccccc1' -F suppliers=