Cluster 8: Difference between revisions
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* We collectively refer to FAC/coreHPC as "Cluster 8". | * We collectively refer to FAC/coreHPC as "Cluster 8". | ||
* | * We are attempting two strategies for cluster 8: | ||
* ZINC thus lives on our cluster ( | ** upload ZINC on the fly, dock it, and then throw it away. | ||
* The pipe to FAC is 100 Gbps, | ** nfs mount our cluster on coreHPC, data gets pulled as needed | ||
* ZINC thus lives on our cluster (currently hosted on cluster 2, cross mounted read only to cluster 7). | |||
* a copy of 50% of ZINC lives on Wynton/cluster 3. | |||
* The pipe to FAC is 100 Gbps. Assming we get 50% of that, allows 1 TB in 3 minutes, and 3 PB is 6 days. | |||
* thus, ftp/dock/delete. | * thus, ftp/dock/delete. | ||
* to get to corehpc | |||
ssh <user>@chpc-ucsf-bastion-vm1.corehpc.ucsf.edu | |||
* to get to slurm head node | |||
ssh chpc-ucsf-login-vm1 | |||
* disks are | |||
/mnt/scratch/user/<user>. | |||
/mnt/home/<user> | |||
/home/remote/<user> ; you land here when you login | |||
== Learn more == | |||
https://wiki.library.ucsf.edu/spaces/CHPC/pages/720396955/CoreHPC+Access+Primer | |||
https://it.ucsf.edu/service/corehpc | |||
https://wiki.library.ucsf.edu/spaces/CHPC/pages/736476672/CoreHPC+Submission+Examples | |||
https://wiki.library.ucsf.edu/spaces/CHPC/pages/751928275/CoreHPC+Technical+Overview | |||
Anyone who uses coreHPC, please take notes, update this and other pages, and teach the rest of the lab how to use it. Thank you. | |||
== how to do remote mounts == | |||
https://wiki.library.ucsf.edu/spaces/CHPC/pages/720396955/CoreHPC+Access+Primer | |||
https://it.ucsf.edu/how-to/fac-drive-mapping-instructions?check_logged_in=1#linux | |||
smb://capstorage.fac.ucsf.edu/CX900007_DS1. lab storage | |||
/mnt/fac/CX900007_DS1 fac | |||
[[Category:Cluster]] | [[Category:Cluster]] | ||
Latest revision as of 22:39, 30 June 2026
We are still learning about FAC/coreHPC.
you will need to get separate (?) FAC and coreHPC accounts.
- FAC is for storage
- coreHPC is for compute
- it is more complicated than that, but it is a reasonable simplification.
- We collectively refer to FAC/coreHPC as "Cluster 8".
- We are attempting two strategies for cluster 8:
- upload ZINC on the fly, dock it, and then throw it away.
- nfs mount our cluster on coreHPC, data gets pulled as needed
- ZINC thus lives on our cluster (currently hosted on cluster 2, cross mounted read only to cluster 7).
- a copy of 50% of ZINC lives on Wynton/cluster 3.
- The pipe to FAC is 100 Gbps. Assming we get 50% of that, allows 1 TB in 3 minutes, and 3 PB is 6 days.
- thus, ftp/dock/delete.
- to get to corehpc
ssh <user>@chpc-ucsf-bastion-vm1.corehpc.ucsf.edu
- to get to slurm head node
ssh chpc-ucsf-login-vm1
- disks are
/mnt/scratch/user/<user>. /mnt/home/<user> /home/remote/<user> ; you land here when you login
Learn more
https://wiki.library.ucsf.edu/spaces/CHPC/pages/720396955/CoreHPC+Access+Primer https://it.ucsf.edu/service/corehpc https://wiki.library.ucsf.edu/spaces/CHPC/pages/736476672/CoreHPC+Submission+Examples https://wiki.library.ucsf.edu/spaces/CHPC/pages/751928275/CoreHPC+Technical+Overview
Anyone who uses coreHPC, please take notes, update this and other pages, and teach the rest of the lab how to use it. Thank you.
how to do remote mounts
https://wiki.library.ucsf.edu/spaces/CHPC/pages/720396955/CoreHPC+Access+Primer
https://it.ucsf.edu/how-to/fac-drive-mapping-instructions?check_logged_in=1#linux
smb://capstorage.fac.ucsf.edu/CX900007_DS1. lab storage /mnt/fac/CX900007_DS1 fac