Github: Difference between revisions

From DISI
Jump to navigation Jump to search
No edit summary
Line 24: Line 24:


= Lab repositories =
= Lab repositories =
* docking-org/ZINC


* docking-org/DOCK - [[DOCK 3]] series software, currently [[DOCK 3.7]]
* docking-org/ZINC - ZINC database creation, curation, management and interface
* docking-org/INTERNAL - tools not part of released packages
* docking-org/TOOLS - publicly released tools not specific to ZINC or DOCK


= Friends of the lab's repositories =
* rdkit/rdkit - The official sources for the RDKit library
* ryancoleman/analysis-scripts - Some simple scripts for analyzing lists of data, both paired & unpaired.
* madgpap/chembl_clippy - cross platform molecular structure rendering app
* metamolecular/osra - Optical structure recognition software, OSRA source from http://cactus.nci.nih.gov/osra/


[[Category:Internal]]
[[Category:Internal]]
[[Category:Sysadmin]]
[[Category:Sysadmin]]
[[Category:Developer]]
[[Category:Developer]]

Revision as of 01:14, 23 February 2014

This page describes how to use github, which is our version control system.

Getting Started

  • Request an account on github. You can request a free one.
  • write to the sysadmins asking to have access to our repositories (see below for a list).

Getting a fresh copy of a repository and starting to use it

Comitting your first change

Best practices for the lab

When and how to branch / merge

When and how to create a new repository

Merging legacy code into github

Backups

Lab repositories

  • docking-org/DOCK - DOCK 3 series software, currently DOCK 3.7
  • docking-org/ZINC - ZINC database creation, curation, management and interface
  • docking-org/INTERNAL - tools not part of released packages
  • docking-org/TOOLS - publicly released tools not specific to ZINC or DOCK

Friends of the lab's repositories

  • rdkit/rdkit - The official sources for the RDKit library
  • ryancoleman/analysis-scripts - Some simple scripts for analyzing lists of data, both paired & unpaired.
  • madgpap/chembl_clippy - cross platform molecular structure rendering app
  • metamolecular/osra - Optical structure recognition software, OSRA source from http://cactus.nci.nih.gov/osra/